View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_high_2 (Length: 371)
Name: NF17812_high_2
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 8171968 - 8172312
Alignment:
| Q |
8 |
agattattcttatagagaaacacagaacggactaatccattcacatggtttatttcccaacatatacttcttgtagatctctatgaaaaatgctttactt |
107 |
Q |
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| T |
8171968 |
agattattcttataaagaaacacagaacggactaatccattcacatggtttatttcccaacatatacttcttgtagatctctatgaaaaatgctttactt |
8172067 |
T |
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| Q |
108 |
cacctctttgaatttgtatattataatttgcaaattgtaagccatgtgaagaatgcattatttttcagatttctattcacattattcggtggtggcctat |
207 |
Q |
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| T |
8172068 |
cacctctttgaatttctatattataatttgcaaattgtaagccatgtgaggaatgcattattttttagatttccattcacattattcggtggtggcctat |
8172167 |
T |
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| Q |
208 |
gaattttgtggtattttggtttgtggataacattaattcaaacacacattattttcttaaaatatactcaaagtgaaatattatgcaccatattcaaaag |
307 |
Q |
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| T |
8172168 |
gaattttgtggtattttggtttgtggataacattaattcaaacacacattattttcttaaaatatactcaaagtgaaatattatgctgcatattcaaaag |
8172267 |
T |
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| Q |
308 |
ctatattgtgttatcataaataagagttaattgactacattttac |
352 |
Q |
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| T |
8172268 |
ctatattgtgctatcataaataagagttaattgactacattttac |
8172312 |
T |
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