View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_high_3 (Length: 363)
Name: NF17812_high_3
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 45515034 - 45514700
Alignment:
| Q |
14 |
cagagagggctacagcattgtcccgacaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacatt |
113 |
Q |
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| T |
45515034 |
cagagagggctacaacattgtcccggcaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacatt |
45514935 |
T |
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| Q |
114 |
atttgtctaattgaatgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacattt |
213 |
Q |
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| T |
45514934 |
atttgtctaattgaatgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacattt |
45514835 |
T |
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| Q |
214 |
ttccgaagttactgttacaaaacaacatgagnnnnnnntaggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaaggattgtc |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514834 |
ttccgaagttactgttacaaaacaacatgagaaaaaaataggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaaggattgtc |
45514735 |
T |
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| Q |
314 |
ttaacttcataaacgaatgcaatttgatgtgtttg |
348 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45514734 |
ttaacttcataaacgaatgcaatttgatgtgtttg |
45514700 |
T |
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