View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_low_2 (Length: 450)
Name: NF17812_low_2
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 43707822 - 43707389
Alignment:
| Q |
1 |
ccttgtaaggatactagagttttagacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttaggaatgaaaa |
100 |
Q |
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| T |
43707822 |
ccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttaggaatgaaaa |
43707723 |
T |
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| Q |
101 |
gttttgtggagaaagttgtgcaagttgaaaagctgaatgaaggagaatgtggtagctctagagttggaaacggaggctaaaagcaaagctggctaatatg |
200 |
Q |
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| T |
43707722 |
gttttgtggagaaagttgtgcaagtagaaaagctgaatgaaggagaatgtggtagctctagagttggaaacggaggctaaaagcaaagctggctaatatg |
43707623 |
T |
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| Q |
201 |
aattgatttctatatgttcaacgttatatctttagaagcactatttgaaagtgtctttatctaattaaccaagtctttgttttgtgcccggcgcgtatat |
300 |
Q |
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| T |
43707622 |
aattgatttctatatgttcaacgttatatctttagaagcactatttgaaagtgtctttatctaattaacgaagtctttgttttgtgcccggcgcgtatat |
43707523 |
T |
|
| Q |
301 |
tgaaaatatcacatttgtgaattataaaaccatttgcttgcttaaaacatgtattctgtacataacaagtttgtcttctaactgagacatgtgacatgtc |
400 |
Q |
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| T |
43707522 |
tgaaaatatcacatttgtgaattataaaaccatttgcttgcttaaaacatgtattctgtacataacaagtttgtcttctaactgagacatgtgacatgtc |
43707423 |
T |
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| Q |
401 |
caagttataatgtacagtcctctcccttgaaaat |
434 |
Q |
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| T |
43707422 |
caagttttaatgtacagtcctctcccttgaaaat |
43707389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 43709519 - 43709425
Alignment:
| Q |
28 |
gaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttaggaatgaaaagttttgtggagaaagttgtgca |
122 |
Q |
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| T |
43709519 |
gaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctttaagaatgaaaagttacgtggagaaagatgtgca |
43709425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 43695626 - 43695517
Alignment:
| Q |
28 |
gaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctttaggaatgaaaagttttgtggagaaagttgtgcaagttg |
127 |
Q |
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| T |
43695626 |
gaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctttaggaattaaaagctatgtggagaaagccgtagaagttg |
43695527 |
T |
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| Q |
128 |
aaaagctgaa |
137 |
Q |
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| T |
43695526 |
aaaagttgaa |
43695517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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