View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_low_3 (Length: 387)
Name: NF17812_low_3
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 32681327 - 32681683
Alignment:
| Q |
14 |
cctgtgtgtgttactcttccgtgaatcaattcagattcttgttgtggattcttttcactttgcaattttcaaccatacaaattctctcactacccttcaa |
113 |
Q |
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| T |
32681327 |
cctgtgtgtgttactcttccgtgaatcaattcagattcttgttgtggattcttttcactttgcaattttcaaccatacaaattctctcactacccttcaa |
32681426 |
T |
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| Q |
114 |
tcttcagtttcattttcattctgttctgtttcccctgtttttcctctgttttgaattcaacccatcttttgattcctccaaaaattcaattcaaattttt |
213 |
Q |
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| T |
32681427 |
tcttcagtttcattttcattctgttctgtttcccctgtttttcctctgttttgaattcaacccatcttttgattcctccaaaaattcaattcaaattttt |
32681526 |
T |
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| Q |
214 |
ggaggaattcaagaactgggttttgattttccgccaaatgggtcaaatagatttcttctaagttccttgatttttctgata-tannnnnnnngttgaatt |
312 |
Q |
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| T |
32681527 |
ggaggaattcaagaactgggttttgattttccgccaaatggttcaaatagatttcttctaagttccttgatttttctgatatttttttttttgttgaatt |
32681626 |
T |
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| Q |
313 |
tgtctttatcatcttggaagagtgttgctacttgttgttgatgatggatgatactgt |
369 |
Q |
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| T |
32681627 |
tgtctttatcatcttggaagagtgttgctacttgttgttgatgatggatgatactgt |
32681683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 38677222 - 38677186
Alignment:
| Q |
333 |
agtgttgctacttgttgttgatgatggatgatactgt |
369 |
Q |
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| T |
38677222 |
agtgttgttacttgttgttgatgatggatgatactgt |
38677186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 11343356 - 11343320
Alignment:
| Q |
333 |
agtgttgctacttgttgttgatgatggatgatactgt |
369 |
Q |
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||||||| ||||| ||||||||||||||||||||||| |
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| T |
11343356 |
agtgttgttacttcttgttgatgatggatgatactgt |
11343320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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