View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_low_4 (Length: 371)
Name: NF17812_low_4
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_low_4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 23887006 - 23886636
Alignment:
| Q |
1 |
tcatcaaaatctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagctatactaaaaggaaacccag |
100 |
Q |
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| T |
23887006 |
tcatcaaaatctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagctatactaaaaggaaacccag |
23886907 |
T |
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| Q |
101 |
atgggttttttgttgtttttgtgaagaataaacgaacagggtagattattgtgcggttgaagtaatgaacaagaaaaggggttatgaggattattgattt |
200 |
Q |
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| T |
23886906 |
atgggttttttgttgtttttgtgaagaataaacgaagagggtagattattgtgcggttgaagtaatgaacaagaaaaggggttatgaggattattgattt |
23886807 |
T |
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| Q |
201 |
tggatttgaggagttgctaccgtgtgggaaaagataaagggtgaaccaaagagtaggactttccatgagaaaccatgcaagaggtggagagagatttgga |
300 |
Q |
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| T |
23886806 |
tggatttgaggagttgctaccgtgtgggaaaagataaagggtgaaccagagagtaggactttccatgagaaaccatgcaagaggtggagagagatttgga |
23886707 |
T |
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| Q |
301 |
ccccaacctggtctatggtgtttaccgtatggagcttggaggaatgtgagagagatgaaggttggtggtgc |
371 |
Q |
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| T |
23886706 |
ccccaacctggtctatggtgtttaccgtatggagcttggaggaatgtgagagagatgaaggttggtggtgc |
23886636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 24345919 - 24346289
Alignment:
| Q |
1 |
tcatcaaaatctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagctatactaaaaggaaacccag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
24345919 |
tcatcaaaatctttgtagtgagagacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagccataacagcaatactaaaaggaaacccag |
24346018 |
T |
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| Q |
101 |
atgggttttttgttgtttttgtgaagaataaacgaacagggtagattattgtgcggttgaagtaatgaacaagaaaaggggttatgaggattattgattt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24346019 |
atgggttttttgttgtttttgtgagaaataaacgaagagggtagatgacagtgcggttgaagtaatgaacaagaaaaggggttatgaggattattgattt |
24346118 |
T |
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| Q |
201 |
tggatttgaggagttgctaccgtgtgggaaaagataaagggtgaaccaaagagtaggactttccatgagaaaccatgcaagaggtggagagagatttgga |
300 |
Q |
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| T |
24346119 |
tgggttcgaggagtttttaccgtgtggaaagagataaagggtaaaccagagtgttggactttccatgaggaaccatgcaagaggtggagagagatttgga |
24346218 |
T |
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| Q |
301 |
ccccaacctggtctatggtgtttaccgtatggagcttggaggaatgtgagagagatgaaggttggtggtgc |
371 |
Q |
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|||||||| |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24346219 |
ccccaaccaggtcgatagtatttaccgtatggagcttggaggaatgtgagagagatgaaggttggtggtgc |
24346289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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