View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17812_low_7 (Length: 345)
Name: NF17812_low_7
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17812_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 39 - 333
Target Start/End: Original strand, 27956598 - 27956907
Alignment:
| Q |
39 |
cattttgttttggcaacgtaaaacaaacttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattggtttaaagc |
138 |
Q |
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| T |
27956598 |
cattttgttttggcaacgtaaaacaaatttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattagtttaaagc |
27956697 |
T |
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| Q |
139 |
agtcttcatgattttatgtattttgaaagacactc-----------------cttgtacttattttcgaacttaagtatatctaagcacnnnnnnngtta |
221 |
Q |
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|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27956698 |
agtcttcatgattttatgtattttgagagacgctcctttgtgtaccatatgtcttgtacttattttcgaacttaagtatatctaagcactttttttgtta |
27956797 |
T |
|
| Q |
222 |
ccaagttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccaccctt |
321 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
27956798 |
ccaagttagaagtacgatgtttctaccaccgcttaacaatgacttttctaatcttccaacttcacgccaccaaatctgaaaccgc--atccaccaccctt |
27956895 |
T |
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| Q |
322 |
aaccactacctt |
333 |
Q |
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|||||||||||| |
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| T |
27956896 |
aaccactacctt |
27956907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 16332172 - 16331950
Alignment:
| Q |
122 |
tagcattggtttaaagcagtcttcatgattttatgtattttgaaagacactcctt---gtac-ttattttcgaacttaagtatatctaagcacnnnnnnn |
217 |
Q |
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||||||| ||||| || | ||||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||| |||||||| |
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| T |
16332172 |
tagcattagtttagagtactcttcatgattttatgtcttttgaaagacactcctttgtgtaccttattttcaaatttaagtatacctaagcactttttt- |
16332074 |
T |
|
| Q |
218 |
gttaccaagttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccac |
317 |
Q |
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||||| | |||| |||||| | |||| || ||| ||||||||||||||||||| ||| |||||||||| |||||| ||| ||||| |||||||||||||| |
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| T |
16332073 |
gttacgatgttataagtacaaagtttttatcactgtttaacaatgacttttcttatcttccaacttcaggccacc-aatttaaaa-cgcaaatccaccac |
16331976 |
T |
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| Q |
318 |
ccttaaccactacctttgcttctcca |
343 |
Q |
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|||||||||||||||| | ||||||| |
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| T |
16331975 |
ccttaaccactaccttggtttctcca |
16331950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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