View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17812_low_9 (Length: 226)

Name: NF17812_low_9
Description: NF17812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17812_low_9
NF17812_low_9
[»] chr7 (13 HSPs)
chr7 (1-211)||(29107026-29107247)
chr7 (4-169)||(29899589-29899747)
chr7 (96-160)||(29445334-29445398)
chr7 (10-102)||(29885456-29885548)
chr7 (96-169)||(29476009-29476082)
chr7 (93-161)||(19887418-19887486)
chr7 (95-163)||(29872022-29872090)
chr7 (93-169)||(29921692-29921768)
chr7 (95-135)||(29881565-29881605)
chr7 (102-161)||(29453834-29453893)
chr7 (103-161)||(29430699-29430757)
chr7 (100-188)||(29459710-29459803)
chr7 (93-161)||(19779897-19779965)
[»] chr4 (4 HSPs)
chr4 (100-168)||(3560658-3560726)
chr4 (95-161)||(53429810-53429876)
chr4 (94-135)||(29945855-29945896)
chr4 (123-168)||(3558067-3558112)
[»] chr2 (4 HSPs)
chr2 (94-135)||(29571551-29571592)
chr2 (94-135)||(29578340-29578381)
chr2 (94-135)||(29580895-29580936)
chr2 (94-135)||(29610184-29610225)
[»] chr1 (4 HSPs)
chr1 (92-161)||(4571206-4571275)
chr1 (94-166)||(4014655-4014727)
chr1 (101-171)||(17563872-17563942)
chr1 (94-158)||(4016497-4016561)
[»] scaffold0242 (2 HSPs)
scaffold0242 (96-161)||(13414-13478)
scaffold0242 (96-161)||(22249-22313)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29107026 - 29107247
Alignment:
Q  1 gaaaatagagaagataaaatacaattgactgcaagtagacctattaccaacaacaatataactagagaagatgcacgcttgtgttgggctatggattacg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29107026 gaaaatagagaagataaaatacaatttactgcaagtagacctattaccaacaacaatataactagagaagatgcacgcttgtgttgggctatggattacg 29107125  T
Q  101 ttgaaagcttagtttcaatattttgaaagtaagttgcttttctatgg-----tttacttgtttgaacttatgtttagtagtagatgttg------tttta 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||| ||||||      |||||    
T  29107126 ttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttactttacttgtttgaacttatgtttagtagtatatgttgttttgttttta 29107225  T
Q  190 ttataattgattgcgtgattat 211  Q
    ||||||||||||| ||||||||    
T  29107226 ttataattgattgagtgattat 29107247  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 29899589 - 29899747
Alignment:
Q  4 aatagagaagataaaatacaattgactgcaagtagacctattaccaacaacaatataactagagaagatgcacgcttgtgttgggctatggattacgttg 103  Q
    |||||| ||||  ||||| |||| ||||||||||||  ||||||||||||   ||||||||||||||| | | ||  || |||||| |||||||||  ||    
T  29899589 aatagaaaagagcaaataaaatttactgcaagtagatttattaccaacaa---tataactagagaagaagtatgcgggttttgggccatggattacactg 29899685  T
Q  104 aaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtt 169  Q
    |||||||||||||||| | ||||    |||||||||||||| |||||||||| ||||| |||||||    
T  29899686 aaagcttagtttcaatttcttga----aagttgcttttctagggtttacttgattgaatttatgtt 29899747  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 29445398 - 29445334
Alignment:
Q  96 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttga 160  Q
    |||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||    
T  29445398 ttacgttgaaagcttagtttcaattttttgaaagtaagttcctgttttatggtttacttgtttga 29445334  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 29885456 - 29885548
Alignment:
Q  10 gaagataaaatacaattgactgcaagtagacctattaccaacaacaatataactagagaagatgcacgcttgtgttgggctatggattacgtt 102  Q
    ||||| |||||| |||| |||||||||| ||||| || ||||||||||||| |||||||||||| ||||| ||| ||||| ||||||||||||    
T  29885456 gaagagaaaatagaatttactgcaagtaaacctaatagcaacaacaatatagctagagaagatgtacgctggtggtgggccatggattacgtt 29885548  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 29476082 - 29476009
Alignment:
Q  96 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtt 169  Q
    |||| ||||||||||||||||||| ||||||||||||||| || || ||| ||||||||||||||| |||||||    
T  29476082 ttactttgaaagcttagtttcaattttttgaaagtaagtttctcttttatagtttacttgtttgaatttatgtt 29476009  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 19887486 - 19887418
Alignment:
Q  93 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    |||||| |||||||||||||||||||| |||||| |||||||| || ||| ||| |||| |||||||||    
T  19887486 ggattatgttgaaagcttagtttcaatcttttgagagtaagtttctattcaatgatttaattgtttgaa 19887418  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 29872022 - 29872090
Alignment:
Q  95 attacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaact 163  Q
    |||| |||||||| ||||||||||| ||||||||||||||| || | | ||||||||||||||| ||||    
T  29872022 attatgttgaaagtttagtttcaattttttgaaagtaagttcctctcccatggtttacttgtttaaact 29872090  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 29921768 - 29921692
Alignment:
Q  93 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtt 169  Q
    |||||| ||||||||||||||| |||| ||||||||||||||| || || | || |||||||||||| | |||||||    
T  29921768 ggattatgttgaaagcttagttccaattttttgaaagtaagttcctattatgtgatttacttgtttggatttatgtt 29921692  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 29881565 - 29881605
Alignment:
Q  95 attacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  29881565 attatgttgaaagcttagtttcaattttttgaaagtaagtt 29881605  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 29453893 - 29453834
Alignment:
Q  102 tgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    |||||||||||||||||| || |||||||||||| ||  ||| ||||||| |||||||||    
T  29453893 tgaaagcttagtttcaattttatgaaagtaagttcctcctctgtggtttagttgtttgaa 29453834  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 29430757 - 29430699
Alignment:
Q  103 gaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    ||||||||||||||| | || |||||||||||| ||  ||| |||||||||||||||||    
T  29430757 gaaagcttagtttcagttttatgaaagtaagttcctcctctgtggtttacttgtttgaa 29430699  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 29459803 - 29459710
Alignment:
Q  100 gttgaaagcttagtttcaatattttgaaagtaagttgcttttctatgg-----tttacttgtttgaacttatgtttagtagtagatgttgtttt 188  Q
    |||||||||||| ||||||| |||| |||||||||| || || |||||     |||||||||||||| ||||||| | | ||| ||||||||||    
T  29459803 gttgaaagcttaatttcaatttttttaaagtaagttcctcttttatggtttaatttacttgtttgaatttatgttcatttgtatatgttgtttt 29459710  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 19779897 - 19779965
Alignment:
Q  93 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    |||||| |||||||||||||||||||  |||||| |||||||| || ||| ||| ||||  ||||||||    
T  19779897 ggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaa 19779965  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 3560726 - 3560658
Alignment:
Q  100 gttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgt 168  Q
    |||||||||||| ||||||| | ||||||||||||| || |||  ||||||||||||||||| ||||||    
T  3560726 gttgaaagcttaatttcaatctgttgaaagtaagttcctcttcgttggtttacttgtttgaatttatgt 3560658  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 53429876 - 53429810
Alignment:
Q  95 attacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    ||||| |||| |||||||||||||| |||||||| |||||| || ||  ||||||||||||||||||    
T  53429876 attacattgagagcttagtttcaattttttgaaattaagttcctctttcatggtttacttgtttgaa 53429810  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 29945855 - 29945896
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29945855 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29945896  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 3558067 - 3558112
Alignment:
Q  123 ttgaaagtaagttgcttttctatggtttacttgtttgaacttatgt 168  Q
    ||||||||||||| || |||||| ||||||||||||||| ||||||    
T  3558067 ttgaaagtaagttcctcttctatcgtttacttgtttgaatttatgt 3558112  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29571592 - 29571551
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29571592 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29571551  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29578381 - 29578340
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29578381 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29578340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29580936 - 29580895
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29580936 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29580895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29610225 - 29610184
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 135  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29610225 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29610184  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 4571206 - 4571275
Alignment:
Q  92 tggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| || ||| || ||||||  |||||||    
T  4571206 tggattatgttgaaagcttagttccaattttttgaaagtaagtttctcttccattgtttacgggtttgaa 4571275  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 4014727 - 4014655
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttat 166  Q
    ||||| ||||||||||||||| |||| ||||||||||||||| || ||  || |||||| |||||||| ||||    
T  4014727 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctttcattgtttacgtgtttgaatttat 4014655  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 17563942 - 17563872
Alignment:
Q  101 ttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgttta 171  Q
    |||||||||||||| | || ||||||||||||||| || ||| | ||||||||||||| ||  ||||||||    
T  17563942 ttgaaagcttagttcctattttttgaaagtaagttcctcttccacggtttacttgttttaatctatgttta 17563872  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4016561 - 4016497
Alignment:
Q  94 gattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgttt 158  Q
    ||||| |||||||| |||||| |||| ||||||||||||||| || ||| || |||||| |||||    
T  4016561 gattatgttgaaagtttagttccaattttttgaaagtaagtttctcttccattgtttacgtgttt 4016497  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 13478 - 13414
Alignment:
Q  96 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    ||||||||||||||| ||| |||| |||||| |||| ||| || || |||||||||||||||||||    
T  13478 ttacgttgaaagcttggttccaattttttgagagtatgtt-ctcttttatggtttacttgtttgaa 13414  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 22313 - 22249
Alignment:
Q  96 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 161  Q
    ||||||||||||||| ||| |||| |||||| |||| ||| || || |||||||||||||||||||    
T  22313 ttacgttgaaagcttggttccaattttttgagagtatgtt-ctcttttatggtttacttgtttgaa 22249  T

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