View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_high_1 (Length: 703)

Name: NF17813_high_1
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_high_1
NF17813_high_1
[»] chr8 (3 HSPs)
chr8 (142-507)||(37532200-37532572)
chr8 (505-690)||(37531940-37532125)
chr8 (1-148)||(37533364-37533512)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 142 - 507
Target Start/End: Complemental strand, 37532572 - 37532200
Alignment:
Q  142 tttgcatatcactttttaaataaaaggtttgataaacaacatgtataaatcttgagagataaaagataannnnnnnnngatgtgata---gtgatnnnnn 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||   |||||         
T  37532572 tttgcatatcactttttaaataaaaggtttgataaacaacatgtataaatcttgagagataaaagataaaaaaaaattgatgtgatacatgtgataaaaa 37532473  T
Q  239 nngagatcgagacaaaattattaaatgtacacttacaatagatagtataaaagtccgtattatgagtatgtattagtgatccactttgtacgatatgaaa 338  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532472 aagagatcgagacaaaattattaaatgtacacttacaatagatagtataaaagtccgtattatgagtatgtattagtgatccactttgtacgatatgaaa 37532373  T
Q  339 tacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataa----catatatataaatgagtgtacgtaatacaaata 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  37532372 tacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataacatacatatatataaatgagtgtacgtaatacaaata 37532273  T
Q  435 taatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcacctagtgcaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532272 taatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcacctagtgcaa 37532200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 505 - 690
Target Start/End: Complemental strand, 37532125 - 37531940
Alignment:
Q  505 caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532125 caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg 37532026  T
Q  605 tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggtt 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532025 tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggtt 37531940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37533512 - 37533364
Alignment:
Q  1 gtacttgtttttctttcccacggtggtcgcatacccattaaggtggaaaatatctcataagnnnnnnnnnnnnnnnnn-ctagaggaatatcttgaaagt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||    
T  37533512 gtacttgtttttctttcccacggtggtcgcatacccattaaggtggaaaatatctcataagttttttttttttttttttctagaggaatatcttgaaagt 37533413  T
Q  100 tttgtgtagcaattaaaagattgcagtatagtttcgaaaatatttgcat 148  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37533412 tttgtgtagcaattaaaagattacagtatagtttcgaaaatatttgcat 37533364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University