View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_high_13 (Length: 411)

Name: NF17813_high_13
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_high_13
NF17813_high_13
[»] chr2 (3 HSPs)
chr2 (12-393)||(38990475-38990859)
chr2 (248-300)||(38991161-38991213)
chr2 (331-384)||(37525932-37525985)
[»] chr8 (3 HSPs)
chr8 (228-385)||(26165275-26165432)
chr8 (186-382)||(14939330-14939522)
chr8 (108-165)||(14939245-14939302)
[»] chr5 (4 HSPs)
chr5 (108-381)||(2779987-2780256)
chr5 (214-305)||(34030244-34030334)
chr5 (331-384)||(30133720-30133773)
chr5 (108-165)||(34030134-34030191)
[»] chr6 (3 HSPs)
chr6 (186-382)||(34988541-34988733)
chr6 (108-165)||(34988456-34988513)
chr6 (331-382)||(26127911-26127962)
[»] chr4 (6 HSPs)
chr4 (186-260)||(31950011-31950084)
chr4 (186-390)||(20632950-20633153)
chr4 (186-253)||(55318867-55318932)
chr4 (235-305)||(5656774-5656843)
chr4 (214-305)||(1058379-1058469)
chr4 (108-165)||(1058522-1058579)
[»] chr7 (1 HSPs)
chr7 (331-384)||(45050823-45050876)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 38990475 - 38990859
Alignment:
Q  12 atgaacttgagttgctagttgtgnnnnnnncttgattgtacattttgaatcatatgttggaccaatcaacattataagagttgctctctttcacctaaaa 111  Q
    |||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38990475 atgaacttgagttgctagttgtgaaaaaaacttgattgtacatcttgaatcatatgttggaccaatcaacattataagagttgctctctttcacctaaaa 38990574  T
Q  112 ccattgtttaattttgtagataactttggagttataaagggatgatgcttctatatttatgaaggannnnnnnn-ggattaattgctctttcaagtgtca 210  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||    
T  38990575 ccattgtttaattttgcagacaactttggagttataaagggatgatgcatctatatttatgaaggatttttttttggattaattgctctttcaagtgtca 38990674  T
Q  211 actactatttt--tatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtcgtt 308  Q
    |||||| ||||  ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  38990675 actactttttttttatgtcagttataacttatgtagttatttaatcattattagtcagggttatgtaattgctttaaattaaattgaactatatgtcgtt 38990774  T
Q  309 ggatgacgtctttagtttcataatgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggtgatatgttc 393  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38990775 ggatgacgtctttagtttcatgatgacaataacatttgatttgtctaagaattgcattatatatttttaatttggtgatatgttc 38990859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 38991161 - 38991213
Alignment:
Q  248 tttaatcattattaatcagggttatgtaattgctttaaattaaattgaattat 300  Q
    |||||| |||||| |||| || |||||||||||||||||||||||||||||||    
T  38991161 tttaattattattgatcatggatatgtaattgctttaaattaaattgaattat 38991213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 37525985 - 37525932
Alignment:
Q  331 atgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggt 384  Q
    ||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||    
T  37525985 atgacaacaacatttgatttgtctaagaaatgcattatatgtttttattttggt 37525932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 385
Target Start/End: Original strand, 26165275 - 26165432
Alignment:
Q  228 acttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtcgttggatgacgtctttagtttc 327  Q
    |||| ||||||||||||| ||||||||||| ||  || ||||||||||||||| ||||||||||||||| ||||||||    |||||| ||||   |||     
T  26165275 acttttaacttatgtagtcatttaatcatttttggtctgggttatgtaattgcattaaattaaattgaactatatgtcaaatgatgacatcttcccttta 26165374  T
Q  328 ataatgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggtg 385  Q
    || |||| || ||||| ||||||   | |||| ||||||||||||||||| |||||||    
T  26165375 atgatgataacaacatctgatttaccttagaagtgcattatatatttttattttggtg 26165432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 382
Target Start/End: Original strand, 14939330 - 14939522
Alignment:
Q  186 ggattaattgctctttcaagtgtcaactactatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaa 285  Q
    ||||||||||||||| |||||||  |||||| ||||   || ||||||||| |||||||| ||| ||||||||||  ||| |||||||||||  |||| |    
T  14939330 ggattaattgctcttccaagtgttgactactttttt---gtgacttataacctatgtagtcatt-aatcattattggtcaaggttatgtaatgactttta 14939425  T
Q  286 attaaattgaattatatgtcgttggatgacgtctttagtttcataatgacaataacatttgatttgtgtaagaattgcattatatatttttaatttg 382  Q
    ||||||||||| ||||||||    |||||| |||||| ||| || ||||||| |  || |||||| | ||| || |||||||||  |||||| ||||    
T  14939426 attaaattgaactatatgtcaaatgatgacatctttattttgatgatgacaacataatctgatttttctaacaagtgcattataagtttttattttg 14939522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 14939245 - 14939302
Alignment:
Q  108 aaaaccattgtttaattttgtagataactttggagttataaagggatgatgcttctat 165  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||    
T  14939245 aaaacctttgtttaattttgtagataactttggagttatcaagcgatgatgcatctat 14939302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 381
Target Start/End: Original strand, 2779987 - 2780256
Alignment:
Q  108 aaaaccattgtttaattttgtagataactttggagttataaagggatgatgcttctatatttatgaaggannnnnnnnggattaattgctctttcaagtg 207  Q
    |||||| |||||| |||| ||| |||||||||||| ||| ||| |||||||| ||||| || | ||| ||        ||||||||||||||| ||||||    
T  2779987 aaaacctttgttttatttcgtaaataactttggagctatcaagtgatgatgcatctatcttcaagaatgatttttttgggattaattgctcttccaagtg 2780086  T
Q  208 tcaactactatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtcgt 307  Q
    |  |||||| ||||| |||||||||||||||||||| | ||||||| |||||| |  |   || ||||||   |||||||||||  |||  |||   | |    
T  2780087 tatactact-tttttgtgtcacttataacttatgtaatcatttaattattattgacaaatattgtgtaatcattttaaattaaaccgaacgata---cat 2780182  T
Q  308 tggatgacgtctttagtttcataatgacaataacatttgatttgtgtaagaattgcattatatatttttaattt 381  Q
    |||||| | | |||| || ||| | ||||||||| |||||||| | ||||||||||||||||| ||||||||||    
T  2780183 tggatgtcatttttatttccatgaagacaataacttttgatttttctaagaattgcattatatgtttttaattt 2780256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 34030244 - 34030334
Alignment:
Q  214 actatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtc 305  Q
    |||| |||| ||| ||||||||| | |||||| ||| |||||||||| |||||||||||| |||   |||||||||||||||| ||||||||    
T  34030244 actacttttttgtgacttataacatgtgtagtcatt-aatcattattgatcagggttatgcaatgattttaaattaaattgaactatatgtc 34030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 30133773 - 30133720
Alignment:
Q  331 atgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggt 384  Q
    ||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||    
T  30133773 atgacaagaacatttgatttgtctaagaaatgcattatatgtttttattttggt 30133720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 34030134 - 34030191
Alignment:
Q  108 aaaaccattgtttaattttgtagataactttggagttataaagggatgatgcttctat 165  Q
    |||||| || ||||||||||||||||| ||||||||||| ||  |||||||| |||||    
T  34030134 aaaacctttatttaattttgtagataaatttggagttatcaaacgatgatgcatctat 34030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 382
Target Start/End: Original strand, 34988541 - 34988733
Alignment:
Q  186 ggattaattgctctttcaagtgtcaactactatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaa 285  Q
    |||||||||| |||| |||||||  |||||| ||||   || ||||||||| |||||||| ||| ||||||||||  ||| |||||||||||  ||||||    
T  34988541 ggattaattgttcttccaagtgttgactactttttt---gtgacttataacctatgtagtcatt-aatcattattggtcaaggttatgtaatgactttaa 34988636  T
Q  286 attaaattgaattatatgtcgttggatgacgtctttagtttcataatgacaataacatttgatttgtgtaagaattgcattatatatttttaatttg 382  Q
    ||||||||||| ||||||||    |||||| |||||| ||| || ||||||| |  || |||||| | ||| || |||||||||| |||||| ||||    
T  34988637 attaaattgaactatatgtcaaatgatgacatctttattttgatgatgacaacataatctgatttttctaacaagtgcattatatgtttttattttg 34988733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 34988456 - 34988513
Alignment:
Q  108 aaaaccattgtttaattttgtagataactttggagttataaagggatgatgcttctat 165  Q
    |||||| ||||||||||||||||||||||||||| |||| ||| |||||||| |||||    
T  34988456 aaaacctttgtttaattttgtagataactttggatttatcaagtgatgatgcatctat 34988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 26127911 - 26127962
Alignment:
Q  331 atgacaataacatttgatttgtgtaagaattgcattatatatttttaatttg 382  Q
    ||||||| |||||||||||||| |||||| |||||||||| |||||| ||||    
T  26127911 atgacaacaacatttgatttgtctaagaagtgcattatatgtttttattttg 26127962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 31950084 - 31950011
Alignment:
Q  186 ggattaattgctctttcaagtgtcaactactatttttatgtcacttataacttatgtagttatttaatcattatt 260  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| | ||||||| ||||||    
T  31950084 ggattaattgctctttcaagtgtcgactact-tttttgtgtcacttataacttatgtaataatttaattattatt 31950011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 390
Target Start/End: Original strand, 20632950 - 20633153
Alignment:
Q  186 ggattaattgctctttcaagtgtcaactactatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaa 285  Q
    |||||||||| ||||||||||| | | |||| ||||| |||||||||||||||||||| | ||||||| ||||||    |   || |||||| | |||||    
T  20632950 ggattaattgttctttcaagtgccgattact-tttttgtgtcacttataacttatgtaataatttaattattattggctaatattgtgtaatcgttttaa 20633048  T
Q  286 attaaattgaattatatgtcgttggatgacgtctttagtttcataatgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggtg 385  Q
    ||||||  |||  |||  ||| || ||| | |||||| |||||| | |||| ||||||||||||| | ||||||||||||| ||| ||||||||||  ||    
T  20633049 attaaaccgaacgatacatcgatgcatgccatctttattttcatgaagacagtaacatttgatttatctaagaattgcattgtatgtttttaattttttg 20633148  T
Q  386 atatg 390  Q
    |||||    
T  20633149 atatg 20633153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 55318932 - 55318867
Alignment:
Q  186 ggattaattgctctttcaagtgtcaactactatttttatgtcacttataacttatgtagttatttaat 253  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| | |||||||    
T  55318932 ggattaattgctctttcaagtgtcaactac--tttttgtgtcacttataacttatgtaataatttaat 55318867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 5656774 - 5656843
Alignment:
Q  235 acttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtc 305  Q
    |||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||    
T  5656774 acttatgtagtccttta-tcattattgatcaaggttatgtaattgctttaaattaaattgaactatatgtc 5656843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 1058469 - 1058379
Alignment:
Q  214 actatttttatgtcacttataacttatgtagttatttaatcattattaatcagggttatgtaattgctttaaattaaattgaattatatgtc 305  Q
    |||| |||| ||| ||||||||| |||||||| ||| |||||||||| |||||||||||| |||   |||||||||||||||| ||||||||    
T  1058469 actacttttttgtgacttataacatatgtagtcatt-aatcattattgatcagggttatgcaatgattttaaattaaattgaactatatgtc 1058379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 1058579 - 1058522
Alignment:
Q  108 aaaaccattgtttaattttgtagataactttggagttataaagggatgatgcttctat 165  Q
    |||||| || ||||||||||||||||| ||||||||||| ||  |||||||| |||||    
T  1058579 aaaacctttatttaattttgtagataaatttggagttatcaaacgatgatgcatctat 1058522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 45050823 - 45050876
Alignment:
Q  331 atgacaataacatttgatttgtgtaagaattgcattatatatttttaatttggt 384  Q
    ||||||| |||||||||||||| || ||| |||||||||| |||||| ||||||    
T  45050823 atgacaacaacatttgatttgtctacgaaatgcattatatgtttttattttggt 45050876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University