View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_high_21 (Length: 325)
Name: NF17813_high_21
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 31391252 - 31391556
Alignment:
| Q |
16 |
aaactattctccccaggaaatttgagagccacatttgacaacaaagattatgctaaggtctacatttatcttatatgagaaaaatatattgttgtttgta |
115 |
Q |
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| T |
31391252 |
aaactattctccccaggaaatttgagagccacatttgacaacaaagattatgctaaggtctacatttatcttatatgagaaaaatacattgttgtttgta |
31391351 |
T |
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| Q |
116 |
ttattaacattatcaatggatactaacttcttcgtttttcatcgattagttggtcgattactatgttagagaaaaatacacattgagatacactggagga |
215 |
Q |
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| T |
31391352 |
ttattaacattatcaatggatactaacttcttcgtttttcatcgattagttggtcgattactatgttagagaaaaatacacattgagatacactggagga |
31391451 |
T |
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| Q |
216 |
atggtgccagatgttaaccaggttcttttctcaacacattcatatatgacattataagtttataacaagtccttgatacaaaattacttcactaagaatt |
315 |
Q |
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| T |
31391452 |
atggtgccagatgttaaccaggttcttttctcaacacattcatatatgacattataa-tttataacaagtccttgatacaaaattacttcactaagactt |
31391550 |
T |
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| Q |
316 |
atctac |
321 |
Q |
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| T |
31391551 |
atctac |
31391556 |
T |
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