View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_high_22 (Length: 273)
Name: NF17813_high_22
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 47439480 - 47439222
Alignment:
| Q |
1 |
atgcaaaatttcttaactatcaaatatctcttccctctttcaatatatcacagtgtccctcacacttttacgctttcaaatgcatgaaaatatattttaa |
100 |
Q |
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|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47439480 |
atgcgaaatttgttaactatcaaatatcacttccctctttcaatatatcacagtgtccctcacacttttacgctttcaaatgcatgaaaatatattttaa |
47439381 |
T |
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| Q |
101 |
ttttatgaagcnnnnnnnnggagtcacgtgaatacggaaccttcaatagatttatggaaccaaaatcacatattttactgttnnnnnnncgtataagcaa |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47439380 |
ttttatgaagcttttttttggagtcacgtgaatacggaaccttcaatagatttatggaaccaaaatcacatattttactgttaaaaaaacgtataagcaa |
47439281 |
T |
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| Q |
201 |
ttcacattaaagatactctcgtaggttttgaaaaatgaaaaagatcagtggagggatgt |
259 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47439280 |
ttcacattaaagatactttcgtaggttctgaaaaatgaaaaagatcagtggagggatgt |
47439222 |
T |
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