View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_high_26 (Length: 238)

Name: NF17813_high_26
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_high_26
NF17813_high_26
[»] chr8 (3 HSPs)
chr8 (1-87)||(14161118-14161204)
chr8 (116-220)||(14161282-14161384)
chr8 (75-122)||(14161226-14161273)
[»] chr7 (4 HSPs)
chr7 (1-87)||(29706502-29706588)
chr7 (116-220)||(29706666-29706768)
chr7 (75-122)||(29706610-29706657)
chr7 (116-157)||(41172225-41172266)
[»] chr6 (3 HSPs)
chr6 (1-87)||(21424268-21424354)
chr6 (116-220)||(21424432-21424534)
chr6 (7-70)||(10026471-10026534)
[»] chr4 (1 HSPs)
chr4 (7-70)||(21360788-21360851)
[»] chr3 (1 HSPs)
chr3 (7-70)||(5048720-5048783)
[»] chr5 (1 HSPs)
chr5 (1-64)||(24867935-24868000)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 14161118 - 14161204
Alignment:
Q  1 atactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacaggttgcatc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  14161118 atactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacatgtagcatc 14161204  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 14161282 - 14161384
Alignment:
Q  116 ttgtgtgcgtgaggatgccatgaattttgagatttgattttttagggtttttgcagtttgaagggttactgagaagaagaagcttgtgtgaacatt-gag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||   |||||||||||||||||||||| |||    
T  14161282 ttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttgaagggtgattg---agaagaagcttgtgtgaacattagag 14161378  T
Q  215 aagatg 220  Q
    ||||||    
T  14161379 aagatg 14161384  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 14161226 - 14161273
Alignment:
Q  75 aacaggttgcatcccccagaaacgaaggaaccggaaaatgattgtgtg 122  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  14161226 aacaggttgcgtcccccagaaatgaaagaaccggaaaatgattgtgtg 14161273  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29706502 - 29706588
Alignment:
Q  1 atactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacaggttgcatc 87  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  29706502 atactcaccacaaagttcctacaaccccaaaattttcttcctctattaggacccattttcgtcactgttctaataacatgtagcatc 29706588  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 29706666 - 29706768
Alignment:
Q  116 ttgtgtgcgtgaggatgccatgaattttgagatttgattttttagggtttttgcagtttgaagggttactgagaagaagaagcttgtgtgaacatt-gag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||   |||||||||||||||||||||| |||    
T  29706666 ttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttgaagggtgattg---agaagaagcttgtgtgaacattagag 29706762  T
Q  215 aagatg 220  Q
    ||||||    
T  29706763 aagatg 29706768  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 29706610 - 29706657
Alignment:
Q  75 aacaggttgcatcccccagaaacgaaggaaccggaaaatgattgtgtg 122  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  29706610 aacaggttgcgtcccccagaaatgaaagaaccggaaaatgattgtgtg 29706657  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 41172225 - 41172266
Alignment:
Q  116 ttgtgtgcgtgaggatgccatgaattttgagatttgattttt 157  Q
    |||||||||||||||||||||| ||||  |||||||||||||    
T  41172225 ttgtgtgcgtgaggatgccatggatttcaagatttgattttt 41172266  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 21424268 - 21424354
Alignment:
Q  1 atactcaccacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttctaataacaggttgcatc 87  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  21424268 atactcaccacaaagttcctacaaccccaaaatttacttcctctattaggacccattttcgtcactgttctaataacatgtagcatc 21424354  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 21424432 - 21424534
Alignment:
Q  116 ttgtgtgcgtgaggatgccatgaattttgagatttgattttttagggtttttgcagtttgaagggttactgagaagaagaagcttgtgtgaacatt-gag 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||   |||||||||||||||||||||| |||    
T  21424432 ttgtgtgcgtaaggatgccatgaattttgagatttgattttttagggttcttgcaggttgaagggtgattg---agaagaagcttgtgtgaacattggag 21424528  T
Q  215 aagatg 220  Q
    ||||||    
T  21424529 aagatg 21424534  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 10026534 - 10026471
Alignment:
Q  7 accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc 70  Q
    |||||| | |||||||||| ||||||||| ||| ||||||  ||||||||||| ||||||||||    
T  10026534 accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc 10026471  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 21360851 - 21360788
Alignment:
Q  7 accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc 70  Q
    |||||| | |||||||||| ||||||||| ||| ||||||  ||||||||||| ||||||||||    
T  21360851 accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc 21360788  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 5048783 - 5048720
Alignment:
Q  7 accacaaagttcctacaaccccaaaatttccttcctctattaggacccattttcgtcactgttc 70  Q
    |||||| | |||||||||| ||||||||| ||| ||||||  ||||||||||| ||||||||||    
T  5048783 accacacaattcctacaacaccaaaattttctttctctatagggacccatttttgtcactgttc 5048720  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24868000 - 24867935
Alignment:
Q  1 atactcaccacaaagttcctacaaccccaaaatttccttcct---ctattaggacccattttcgtca 64  Q
    |||| ||||||||| ||||| |||| ||||||||||||||||   ||||| ||||||||||||||||    
T  24868000 atacccaccacaaatttcct-caacaccaaaatttccttcctggtctattgggacccattttcgtca 24867935  T

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