View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_high_3 (Length: 605)

Name: NF17813_high_3
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_high_3
NF17813_high_3
[»] chr7 (3 HSPs)
chr7 (17-461)||(32060911-32061355)
chr7 (398-579)||(16331492-16331673)
chr7 (545-587)||(32059213-32059255)
[»] chr3 (4 HSPs)
chr3 (72-579)||(3236931-3237424)
chr3 (68-214)||(34933491-34933637)
chr3 (68-244)||(14505517-14505693)
chr3 (69-179)||(8969993-8970103)
[»] chr8 (4 HSPs)
chr8 (69-356)||(39530618-39530898)
chr8 (371-502)||(11109057-11109188)
chr8 (371-498)||(11595219-11595346)
chr8 (403-492)||(39530925-39531014)
[»] chr4 (3 HSPs)
chr4 (371-531)||(37590200-37590360)
chr4 (162-254)||(17456422-17456514)
chr4 (135-187)||(37589980-37590032)
[»] chr6 (1 HSPs)
chr6 (397-540)||(33097813-33097956)
[»] chr1 (1 HSPs)
chr1 (69-166)||(4166664-4166761)
[»] chr2 (1 HSPs)
chr2 (96-226)||(21086558-21086688)
[»] chr5 (2 HSPs)
chr5 (96-184)||(19233945-19234033)
chr5 (222-250)||(34672154-34672182)


Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 32061355 - 32060911
Alignment:
Q  17 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32061355 tataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaagtgtttttct 32061256  T
Q  117 aaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 216  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061255 aaagcgagaaaggagattatgattaaatcagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcg 32061156  T
Q  217 aggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061155 aggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataatagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaa 32061056  T
Q  317 ggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactatgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061055 ggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactgtgcatgcttgggaaacaaggatggaagcttcaaactgaaccggatactc 32060956  T
Q  417 tagttgctaaggtgtttaaggcaaggtattatcctcatagtaatt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32060955 tagttgctaaggtgtttaaggcaaggtattatcctcatagtaatt 32060911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 398 - 579
Target Start/End: Original strand, 16331492 - 16331673
Alignment:
Q  398 caaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctagatttg 497  Q
    |||||||||||| | ||| ||||| | ||||| || |  |||||||||| ||||||| ||||||| ||  | | ||| ||||||||||||||||| ||||    
T  16331492 caaactgaaccgaacactttagtttccaaggttttcagtgcaaggtattttcctcatggtaattatctcaggtcaaaattaggacataatcctagttttg 16331591  T
Q  498 tttggtggaatatttttagctcaaaattggttgttagtcatggcgcgcaatagatagtaggatccggatttaatattcctat 579  Q
    ||||| |||  ||||||||| ||||| ||||||| || ||||| |||| || ||  |||||||| || | | ||||||||||    
T  16331592 tttggcggagcatttttagcgcaaaactggttgtgaggcatggagcgcgatggaaggtaggatcaggttatgatattcctat 16331673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 545 - 587
Target Start/End: Complemental strand, 32059255 - 32059213
Alignment:
Q  545 caatagatagtaggatccggatttaatattcctatgataggag 587  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32059255 caatagatagtaggatccggatttaatattcctatgataggag 32059213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 72 - 579
Target Start/End: Original strand, 3236931 - 3237424
Alignment:
Q  72 agagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatg 171  Q
    ||||| |||||||  || |||| ||||||||| ||||||||||||| | |  |||||||| |||||||||| |  || ||| |||||||||| |||||||    
T  3236931 agagtgtggcaaagaattaatagctggagtagcaagtgtttgtctagatctggaagggaggttatgattaagtctgtccttcagtcaattccctcatatg 3237030  T
Q  172 tgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatggtggtgctaataagtaataata 271  Q
    ||||||| |||||     | |||||| | || ||||| ||||| ||| | ||| | |||| ||| ||||||||| |||| |||||    |||||||||      
T  3237031 tgatgagcatttttcggcttcctaattccttgctagaagaaattgagaaaatgttgaatgccttctggtgggggcatggcggtgc----aagtaataa-- 3237124  T
Q  272 gaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaatgatttaactatgca 371  Q
     |||||| |||||||||  ||| || |||   ||||||||||| |||||||||||||||||||| || ||||||||||  |||||||       ||   |    
T  3237125 -aggaattcattggttggcgtgggataaattgtcggttcacaagaggcatggtggaatgggattcaaagatcttgcggcgtttaatg-------tagcaa 3237216  T
Q  372 tgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggttt 471  Q
    |||| || || ||||| |||||  | ||||||||||| || ||| ||||| | ||||| || ||||||||||||||||||||| ||||||| || || |     
T  3237217 tgctcggaaagcaagggtggaaattccaaactgaaccagacactttagtttccaaggttttcaaggcaaggtattatcctcatggtaattatctcgggtc 3237316  T
Q  472 aaagttaggacataatcctagatttgtttggtggaatatttttagctcaaaattggttgttagtcatggcgcgcaatagatagtaggatccggatttaat 571  Q
     || |||||||| |||||||| ||||||||| |||  ||||||||| ||||| ||||||| || ||||| |||| || ||  |||||||| || | | ||    
T  3237317 caaattaggacacaatcctagttttgtttggcggagcatttttagcgcaaaactggttgtgaggcatggagcgcgatggaaggtaggatcaggttatgat 3237416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 34933491 - 34933637
Alignment:
Q  68 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 167  Q
    ||||||||| |||||||  |||| || |||||| ||||| ||||||||||||||  | |||||| ||||||| ||||  || ||| |  | ||||||||     
T  34933491 ggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatcaaatctgttcttcaagctattccatct 34933590  T
Q  168 tatgtgatgagtattttcaaattacctaatacattactagatgaaat 214  Q
    ||||| |||||||| || |  ||||| || ||||||||||| |||||    
T  34933591 tatgtcatgagtatctttaggttaccaaacacattactagaggaaat 34933637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 14505693 - 14505517
Alignment:
Q  68 ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca 167  Q
    |||||| ||||||||||| || | ||| ||||| ||||| |||||||| |||||  | || ||| ||||||| ||||| || ||| |  | ||||||||     
T  14505693 ggatagggtatggcaaaaaataagtatttggagcagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattccatct 14505594  T
Q  168 tatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggg 244  Q
    ||||| |||||||| ||||   |||| |||||  | || |||||||| ||| ||||||| ||||  |||||||||||    
T  14505593 tatgttatgagtatcttcaggctacccaatactctcctggatgaaatagagaagatgatgaatgctttttggtgggg 14505517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 8970103 - 8969993
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 168  Q
    |||||||| ||||| ||||| | || |||||| ||||| ||||||||||||||  |||||||| | ||||| ||||  || ||| | || |||||||| |    
T  8970103 gatagagtgtggcagaagattagtagctggagcagtaaatgtttgtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcct 8970004  T
Q  169 atgtgatgagt 179  Q
    |||| ||||||    
T  8970003 atgttatgagt 8969993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 356
Target Start/End: Original strand, 39530618 - 39530898
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat 168  Q
    |||||||| ||||| || || ||||  ||||||||||||||| ||||||||||| || | ||  ||||||| |||| ||| ||| |||| ||  | || |    
T  39530618 gatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagcgggacgagatgttatgatcaaatcagttcttcagtctatctcgtcgt 39530717  T
Q  169 atgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatggtggtgctaataagtaata 268  Q
    |||| ||||| || ||||  ||||| ||||| ||||| || ||||||||  ||||||| |||| ||||||||||||||||||||| ||       ||| |    
T  39530718 atgttatgagcatcttcaggttaccgaatactttacttgaggaaatcgaaaagatgatgaatgccttttggtgggggaatggtggcgc-------taaca 39530810  T
Q  269 atagaggaatgcattggttgttgtgagacaaaccatcggttcacaaaaggcatggtggaatgggatttaaggatcttgcgggatttaa 356  Q
    ||||||||||||||||||| |  ||  ||||||  |||||||| ||||||||||| |||||||| |||||||||||||||| ||||||    
T  39530811 atagaggaatgcattggttataatggaacaaactttcggttcataaaaggcatggaggaatgggttttaaggatcttgcggcatttaa 39530898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 371 - 502
Target Start/End: Complemental strand, 11109188 - 11109057
Alignment:
Q  371 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 470  Q
    |||||||| ||||||||||||||||| |||||| |||  |||||| |||||||||||||||| |||||||||||||  ||||  |||||||  ||||| |    
T  11109188 atgcttggaaaacaaggatggaagctccaaacttaacttgatactttagttgctaaggtgttcaaggcaaggtatttccctcgaagtaattttcttgggt 11109089  T
Q  471 taaagttaggacataatcctagatttgtttgg 502  Q
     ||| || |||||||||||||| |||||||||    
T  11109088 caaaattgggacataatcctagttttgtttgg 11109057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 371 - 498
Target Start/End: Complemental strand, 11595346 - 11595219
Alignment:
Q  371 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 470  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||| || ||||||||||||| |||||||| ||||  |||| ||||||||  ||||| |    
T  11595346 atgcttggaaaacaaggatggaagctccaaactgaacctgatactttatttgctaaggtgttcaaggcaagctattcccctcgtagtaattttcttgggt 11595247  T
Q  471 taaagttaggacataatcctagatttgt 498  Q
     ||| || |||||||||||||| |||||    
T  11595246 caaaattgggacataatcctagttttgt 11595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 39530925 - 39531014
Alignment:
Q  403 tgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctag 492  Q
    |||||| ||| |||| || ||||||||||||||||| | ||| || ||  ||||||||| |||||||| |||| | ||||| ||||||||    
T  39530925 tgaaccagattctcttgtggctaaggtgtttaaggctaagtactacccaaatagtaatttccttggttcaaagctgggacacaatcctag 39531014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 371 - 531
Target Start/End: Original strand, 37590200 - 37590360
Alignment:
Q  371 atgcttgggaaacaaggatggaagcttcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtt 470  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |||||||||| || |||||||| | ||||| | |||| || ||||| |    
T  37590200 atgcttgggaaacaaggatggaagtttcaaactgaatcggatacgctggtttctaaggtgttcaaagcaaggtactttcctcttggtaactatcttgggt 37590299  T
Q  471 taaagttaggacataatcctagatttgtttggtggaa-tatttttagctcaaaattggttgt 531  Q
     |||||||||||| ||||||| |||| |||||  ||| ||| |||||  |||||||||||||    
T  37590300 caaagttaggacacaatccta-atttttttgggcgaagtatatttagtgcaaaattggttgt 37590360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 17456422 - 17456514
Alignment:
Q  162 ccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttttggtgggggaatggtggt 254  Q
    ||||| ||||| |||||||||||||   ||||||||||  | || ||||||||  || ||||||| |||| ||||||||||||  ||||||||    
T  17456422 ccatcttatgttatgagtattttcaggctacctaatactctcctggatgaaatatagaagatgatgaatgccttttggtggggacatggtggt 17456514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 37589980 - 37590032
Alignment:
Q  135 atgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaa 187  Q
    ||||||||||| || |||  |||||| || |||||||||||||||||||||||    
T  37589980 atgattaaatttgttcttctgtcaatcccctcatatgtgatgagtattttcaa 37590032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 540
Target Start/End: Original strand, 33097813 - 33097956
Alignment:
Q  397 tcaaactgaaccggatactctagttgctaaggtgtttaaggcaaggtattatcctcatagtaattaccttggtttaaagttaggacataatcctagattt 496  Q
    |||||||||||| || ||||||||| | ||||| || ||| ||||||||| ||||||| | ||||| || || | ||| ||||||||||||||||| |||    
T  33097813 tcaaactgaaccagacactctagtttccaaggttttcaagtcaaggtattttcctcatggcaattatctcgggtcaaaattaggacataatcctagtttt 33097912  T
Q  497 gtttggtggaatatttttagctcaaaattggttgttagtcatgg 540  Q
     ||||| |||  ||||||| | ||||| ||||||| || |||||    
T  33097913 ctttggcggagcatttttaacgcaaaactggttgtgaggcatgg 33097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 4166664 - 4166761
Alignment:
Q  69 gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatc 166  Q
    |||||||||||||| |||||||||| ||||||||| || || |||||||||||  |||||||| | ||||| |||| ||| ||| | || ||||||||    
T  4166664 gatagagtatggcagaagatcaatagctggagtagcaaatgcttgtctaaagcaggaagggaggtcatgatcaaatcagttcttcaatctattccatc 4166761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 21086688 - 21086558
Alignment:
Q  96 tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattaccta 195  Q
    ||||| ||||| ||||||||||||||  |||||||  | ||||| ||||  || ||| | || |||||||| ||||| |||||||| |||| |||||| |    
T  21086688 tggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattccatcctatgttatgagtatcttcagattaccaa 21086589  T
Q  196 atacattactagatgaaatcgaggagatgat 226  Q
    | || ||  |||||||||| ||| |||||||    
T  21086588 acactttgttagatgaaattgagaagatgat 21086558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 19233945 - 19234033
Alignment:
Q  96 tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtatttt 184  Q
    ||||||||||||||||| ||||||||  |  | ||| ||||||||||||  || ||  |||| |||||||| ||||| |||||||||||    
T  19233945 tggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatccgtcctacagtctattccatcgtatgttatgagtatttt 19234033  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 34672154 - 34672182
Alignment:
Q  222 atgataaatggcttttggtgggggaatgg 250  Q
    |||||||||||||||||||||||||||||    
T  34672154 atgataaatggcttttggtgggggaatgg 34672182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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