View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17813_high_5 (Length: 530)
Name: NF17813_high_5
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 517
Target Start/End: Original strand, 32802812 - 32803317
Alignment:
| Q |
12 |
atcatcatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaaca |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802812 |
atcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaaca |
32802911 |
T |
|
| Q |
112 |
acacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaagg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802912 |
acacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaacctggtggagcaggaccaggtagaaatgtcccggttaagg |
32803011 |
T |
|
| Q |
212 |
acaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactgagaacaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803012 |
acaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactgagaacaca |
32803111 |
T |
|
| Q |
312 |
aacaccgcgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagctacctccatgacatggctcttcaaagcatttgggcta |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803112 |
aacaccgcgttgacgcctccttgcgaattgtgctacactttctgctatatcagctccaccggctacctccatgacatggctcttcaaagcatttgggcta |
32803211 |
T |
|
| Q |
412 |
tctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggtt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803212 |
tctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggtt |
32803311 |
T |
|
| Q |
512 |
catctc |
517 |
Q |
| |
|
|||||| |
|
|
| T |
32803312 |
catctc |
32803317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 16579076 - 16578580
Alignment:
| Q |
19 |
tcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaac |
118 |
Q |
| |
|
||||| || |||||||| | ||| ||||| |||||||||| ||||||||| ||||||| ||||||||||||| | |||| | || ||||||||||| | |
|
|
| T |
16579076 |
tcatcttcttcaagtggcaatctttcataggtagcattagcaaaagtagcagcaataaccataacaggtccagcagcaatcaaaggtccaacaacacttc |
16578977 |
T |
|
| Q |
119 |
ctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaat |
218 |
Q |
| |
|
| |||||||| || || || || || || | ||||||||| || ||||||| ||||| |||||||| || |||||||| | |||||||| || | ||| |
|
|
| T |
16578976 |
caccaacaacttgcccttgtccaccggctaagtacactgtgagtccggttgcgcctggaggagcaggtcctggtagaaaagctccggttaatgatagaat |
16578877 |
T |
|
| Q |
219 |
ctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccg |
318 |
Q |
| |
|
|||||||| ||||||||||||||||| || || || |||| |||||||||||| |||||||| || || || ||||| || || ||||||||||| ||| |
|
|
| T |
16578876 |
atcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccg |
16578777 |
T |
|
| Q |
319 |
cgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagctacctccatgacatggctcttcaaagcatttgggctatctcttg |
418 |
Q |
| |
|
||||| ||||||||||| || || ||||||||||| |||| ||| ||||| | ||| ||||| |||||||| |||| | |||||| || ||||||| |
|
|
| T |
16578776 |
cgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatttggactgtctcttg |
16578677 |
T |
|
| Q |
419 |
ttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggttcatc |
515 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||| || || |||||||||||||||||||||||||| |||| ||| |||||||||||| | |||||||| |
|
|
| T |
16578676 |
ttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttcaactgcaccttcttttggttcatc |
16578580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 32809374 - 32809702
Alignment:
| Q |
12 |
atcatcatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaaca |
111 |
Q |
| |
|
||||| ||||| || ||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||| | |||| ||| ||||||||||||||||| |
|
|
| T |
32809374 |
atcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcaataagcataaaaagtcctactacaacaagagttccaaca |
32809473 |
T |
|
| Q |
112 |
acacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaagg |
211 |
Q |
| |
|
||| ||||| ||| || || || ||||||||| ||||||||||| |||| || | || |||| |||| ||||||| ||| ||||||| |
|
|
| T |
32809474 |
acaaaacctttaactacgtgaccttgacctccatccaggtacactataaggccaatcga---------agcatgaccgagtagaaacttcctagttaagg |
32809564 |
T |
|
| Q |
212 |
acaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagc-----tacagagccacttccactgaga |
306 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
32809565 |
acaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagccacttccactaaaa |
32809661 |
T |
|
| Q |
307 |
acacaaa-caccgcgttgacgccttcttgcgaattgtgcta |
346 |
Q |
| |
|
| | ||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
32809662 |
aaaaaaagcaccacattgacgccttcttgcgaattgtgcta |
32809702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 443 - 517
Target Start/End: Original strand, 32809703 - 32809777
Alignment:
| Q |
443 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggttcatctc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcagttgcatcttctctaggttcatctc |
32809777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 478
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
430 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
478 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 30679022 - 30679129
Alignment:
| Q |
39 |
tctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaacctccaacaacctggccctga |
138 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || |||| ||||||||||||| ||||| | || || ||||| |||| ||||||||||| |||||| |
|
|
| T |
30679022 |
tctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaaggacctgcaacagaaccaccaacaacctgcccctga |
30679121 |
T |
|
| Q |
139 |
cctccagc |
146 |
Q |
| |
|
|| ||||| |
|
|
| T |
30679122 |
ccaccagc |
30679129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 13212840 - 13212892
Alignment:
| Q |
426 |
gataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
478 |
Q |
| |
|
|||||||||||||||| ||||||| || || | |||||||||||||||||||| |
|
|
| T |
13212840 |
gataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University