View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_high_6 (Length: 520)
Name: NF17813_high_6
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 503
Target Start/End: Complemental strand, 11687336 - 11686843
Alignment:
| Q |
10 |
aagaagaaaaagaaaataagagtttgttataggtgtggtaaagggaagtgggaaactaaagagtcttgcatcgtttgtaatgctaagtattgcagcagct |
109 |
Q |
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| T |
11687336 |
aagaagaaaaagaaaataagagtttgttataggtgtggtaaagggaagtgggaaactaaagagtcttgcatcgtttgtaatgcgaagtattgcagcagct |
11687237 |
T |
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| Q |
110 |
gtgtgctcagggcaatgggatcaatgcctgaagggcgcaaatgtgtaacatgcatcggccagcctattgacgaatcaaagcgtctgaaattagggaaata |
209 |
Q |
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| T |
11687236 |
gtgtgctcagggcaatgggatcaatgcctgaagggcgcaaatgtgtaacatgcatcggccagcctattgacgaatcaaagcgtctgaaattagggaaata |
11687137 |
T |
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| Q |
210 |
ttctagggtgttatcccgactgttgagtcctctagaagttaagcaaattatgaaagcggagaaagaatgttcggctaatcagcttcagccagagcagttg |
309 |
Q |
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| T |
11687136 |
ttctagggtgttatcccgactgttgagtcctctagaagttaagcaaattatgaaagcggagaaagaatgttcggctaatcagcttcagccagagcagttg |
11687037 |
T |
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| Q |
310 |
agtgtcaacggatttctcctcaagcctgatgagatggaagaattacttcgatgtcccttacctccacgcaagctgaagcctggtagatattggtacgaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11687036 |
agtgtcaacggatttctcctcaagcctgatgagatggaagaattacttggatgtcccttacctccacgcaagctgaagcctggtagatattggtacgaca |
11686937 |
T |
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| Q |
410 |
aagaatctggtctatggggaaaggtgaagatttatgctttatttactgagaaatttctgctttaattatattttcagttggcatagagttgact |
503 |
Q |
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| T |
11686936 |
aagaatctggtctatggggaaaggtgatgatttatgctttatttactgagaaatttctgctttaattatattttcagttggcatagagttgact |
11686843 |
T |
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