View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_high_7 (Length: 519)
Name: NF17813_high_7
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 29147315 - 29146838
Alignment:
| Q |
19 |
acttggctctaccaccccatgttccaatcttcaaattctccattctgtagtaattt--attcagaattttatgtatctatctatgactctatatatgtca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147315 |
acttggctctaccaccccatgttccaatcttcaaattctccattctgtagtaatttttattcagaattttatgtatctatctatgactctatatatgtca |
29147216 |
T |
|
| Q |
117 |
gattagtttatttattatgtaactaaattaaatttatcttaaagtaatttagatacctgaatattatagaggttaagaatgtgcaaataggtaccaagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147215 |
gattagtttatttattatgtaactaaattaaatttatcttaaagtaatttagatacctgaatattatagaggttaagaatgtgcaaataggtaccaagtt |
29147116 |
T |
|
| Q |
217 |
gagaaaattgactgaataagcagcagttgtgtctcgaagaccataatagaataaccctagagccattgtcatcctgttaagttatcaaatattatgaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147115 |
gagaaaattgactgaataagcagcagttgtgtctcgaagaccataatagaataaccctagagccattgtcatcctgttaagttatcaaatattatgaaaa |
29147016 |
T |
|
| Q |
317 |
tatttgagttaatcgcaactaaatttaaagatgtacatatgataattggtgattgagcgatgtcagtgcctattaaaacttgacctctcataacacatat |
416 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||| |||||||| | |
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| T |
29147015 |
tatttgagttaatcgcgactaaatttaaagatgtacatatgataattagggattgagcgatgtcagtgcctattaaaatttgatctctgataacacaagt |
29146916 |
T |
|
| Q |
417 |
tttttataggcaccgacatcgatcaaataagaaacctaaatgtttaacacttgtgctgcac--tatattaacactatattgagatttt |
502 |
Q |
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| T |
29146915 |
tttttataggtatcgacatcgatcaaataaga----------tttaacacttgtgctgcactatatattaacactatattgagatttt |
29146838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 29224492 - 29224615
Alignment:
| Q |
169 |
atacctgaatattatagaggttaagaatgtgcaaataggtaccaagttgagaaaattgactgaataagcagcagttgtgtctcgaagaccataatagaat |
268 |
Q |
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||||||| |||| ||||| ||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
29224492 |
atacctgcatatgatagaagttaagaatgtcaatataggaaccaagttgagaaagttgacggaataagtagcagttgtgtctcgaagaccgtaatagaat |
29224591 |
T |
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| Q |
269 |
aaccctagagccattgtcatcctg |
292 |
Q |
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| T |
29224592 |
aaccctagagccattgtcatcctg |
29224615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 29224372 - 29224418
Alignment:
| Q |
19 |
acttggctctaccaccccatgttccaatcttcaaattctccattctg |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29224372 |
acttggctctaccaccccatgttccaatcttcaaattctccattctg |
29224418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 38852070 - 38852170
Alignment:
| Q |
161 |
taatttagatacctgaatattatagaggttaagaatgtgcaaataggtaccaagttgagaaaattgactgaataagcagcagttgtgtctcgaagaccat |
260 |
Q |
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||||||| ||||||||||| || | ||| ||||||||||| ||||| | |||||||||||||||| | ||| | |||| ||||||||||| ||||| |
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| T |
38852070 |
taatttaaatacctgaataagatggcggtcaagaatgtgcagataggaattaagttgagaaaattgagagcatatgtggcagatgtgtctcgaataccat |
38852169 |
T |
|
| Q |
261 |
a |
261 |
Q |
| |
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| |
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|
| T |
38852170 |
a |
38852170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 293
Target Start/End: Original strand, 5304157 - 5304319
Alignment:
| Q |
131 |
ttatgtaactaaattaaatttatcttaaagtaatttagatacctgaatattatagaggttaagaatgtgcaaataggtaccaagttgagaaaattgactg |
230 |
Q |
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||||||| ||||||| ||| | |||| || |||||| |||||||| |||| ||||| || ||||| |||||||| || |||||||||||||| ||||| | |
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| T |
5304157 |
ttatgtagctaaatttaatgtgtctttaactaatttggatacctgcatatgatagaagtcaagaaggtgcaaatgggaaccaagttgagaaagttgacag |
5304256 |
T |
|
| Q |
231 |
aataagcagcagttgtgtctcgaagaccataatagaataaccctagagccattgtcatcctgt |
293 |
Q |
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||||| ||||| ||||||||| ||||||||||||||||| || | ||||||||||||||||| |
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| T |
5304257 |
cataagtagcagatgtgtctcggagaccataatagaataatccaaaagccattgtcatcctgt |
5304319 |
T |
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