View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_high_9 (Length: 511)
Name: NF17813_high_9
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 33355053 - 33355549
Alignment:
| Q |
1 |
ttttcttggtacaaagattacattcttgtttaatgatgcttttaattacttgtaccatgctagtataacaaaactttcaaatttgctctctgttttcatg |
100 |
Q |
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| T |
33355053 |
ttttcttggtacaaagattacattcttgtttaatgatgcttttaattacttgtaccatgctagtataacaaaactttcaaatttgctctctgttttcatg |
33355152 |
T |
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| Q |
101 |
tatccaactgaatctacatatgttgttctgttttagtttctgggtgtcttaaattcaaagaaagcaaaactgagagagcttcgagatcagctgtcaaaac |
200 |
Q |
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| T |
33355153 |
tatccaactgaatctacatatgttgttctgttttagtttctgggtgtcttaaattcaaagaaagcaaaactgagagagcttcgagatcagctgtcaaaac |
33355252 |
T |
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| Q |
201 |
aaggtaacggcgataaatctcctcaagaagaagaagacccagaaaaaactgagagttttgatgaagaaagtgatgatggaaaaagcgatgaagatcctca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33355253 |
aaggtaacggcgataaatctcctcaagaagaagaagacccagaaaaaactgagagttttgatgaagaaagtgatgatggaaaaagtgatgaagatcctca |
33355352 |
T |
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| Q |
301 |
aaaatgtattactagttcttcgaaggacgctggagcaactaagcgttctcgtccaaggagaactagactcgcatgacaaattagaagaactagactcaca |
400 |
Q |
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| T |
33355353 |
aaaatgtattactagttcttcgaaggacgctggagcaactaagcgttctcgtccaaggagaactagactcgcatgacaaattagaagaactagactcaca |
33355452 |
T |
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| Q |
401 |
tgacaaattttctgctctcagcaagtgttttgttttcaccatggatttcacatttgtgatatctgtctcataatccatatagaacggtgtaaatatt |
497 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355453 |
tgacaaattttctgcactcagcaagtgttttgttttcaccatggatttcacatttgtgatatctgtctcataatccatatagaacggtgtaaatatt |
33355549 |
T |
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