View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_low_1 (Length: 703)

Name: NF17813_low_1
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_low_1
NF17813_low_1
[»] chr8 (3 HSPs)
chr8 (142-507)||(37532200-37532572)
chr8 (505-690)||(37531940-37532125)
chr8 (1-148)||(37533364-37533512)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 142 - 507
Target Start/End: Complemental strand, 37532572 - 37532200
Alignment:
Q  142 tttgcatatcactttttaaataaaaggtttgataaacaacatgtataaatcttgagagataaaagataannnnnnnnngatgtgata---gtgatnnnnn 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||   |||||         
T  37532572 tttgcatatcactttttaaataaaaggtttgataaacaacatgtataaatcttgagagataaaagataaaaaaaaattgatgtgatacatgtgataaaaa 37532473  T
Q  239 nngagatcgagacaaaattattaaatgtacacttacaatagatagtataaaagtccgtattatgagtatgtattagtgatccactttgtacgatatgaaa 338  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532472 aagagatcgagacaaaattattaaatgtacacttacaatagatagtataaaagtccgtattatgagtatgtattagtgatccactttgtacgatatgaaa 37532373  T
Q  339 tacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataa----catatatataaatgagtgtacgtaatacaaata 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  37532372 tacaaatatcgttgttgtgagttaaccattgatattgaagagaccacatatagttgtgaataacatacatatatataaatgagtgtacgtaatacaaata 37532273  T
Q  435 taatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcacctagtgcaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532272 taatttgtttcaagtttttatatttattcttgagaatatatttcagatagtcgcaaattctcacctagtgcaa 37532200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 505 - 690
Target Start/End: Complemental strand, 37532125 - 37531940
Alignment:
Q  505 caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532125 caatgatagttggggcttctattaaatttagaggtgataatagagagtttaaggctgcaaagatgtgctggaagccatggaggttcgaggtttgggcagg 37532026  T
Q  605 tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggtt 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532025 tgccatggggctgctcacgactcttcaatggcccaagagttttaatctcgatcggattgattatgtttgaagttgatacacaggtt 37531940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37533512 - 37533364
Alignment:
Q  1 gtacttgtttttctttcccacggtggtcgcatacccattaaggtggaaaatatctcataagnnnnnnnnnnnnnnnnn-ctagaggaatatcttgaaagt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||    
T  37533512 gtacttgtttttctttcccacggtggtcgcatacccattaaggtggaaaatatctcataagttttttttttttttttttctagaggaatatcttgaaagt 37533413  T
Q  100 tttgtgtagcaattaaaagattgcagtatagtttcgaaaatatttgcat 148  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37533412 tttgtgtagcaattaaaagattacagtatagtttcgaaaatatttgcat 37533364  T

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