View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_10 (Length: 500)
Name: NF17813_low_10
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 28823568 - 28824040
Alignment:
| Q |
11 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaaagtagtgttcataacct |
110 |
Q |
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| T |
28823568 |
agaatatatattataaggcaaacctaatacaagacattgaaacattgtacaaaggtaaaattaaggatgatgctgcaactcaagctagtgttcataacct |
28823667 |
T |
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| Q |
111 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagtggatgtagcacatttaacgcatcaaa |
210 |
Q |
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| T |
28823668 |
tggtgtgttggaacatattaattagttatgattgtgtacttggagattcacaaacaagtatagtattaaacagttcatgtagcacatttaacgcatcaaa |
28823767 |
T |
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| Q |
211 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcagtcaaagcaagcactttgccacatcacaacaagccata |
310 |
Q |
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| T |
28823768 |
cttgcgtagcttctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcaatgaaagcaaacactttgccacatcacaacaagccata |
28823867 |
T |
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| Q |
311 |
ggagaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtaatt |
410 |
Q |
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| T |
28823868 |
ggtgaggtaattgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtagtt |
28823967 |
T |
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| Q |
411 |
gctcagctgctaatggagctagagtcatctatgatggctgcttcctcaggtatgtgcatatggagttcatgga |
483 |
Q |
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| T |
28823968 |
gctcagctgctaatggagctagagtcatctatgatggctgcttcctcaggtatgtacatatggagttcatgga |
28824040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 223 - 472
Target Start/End: Original strand, 28833033 - 28833282
Alignment:
| Q |
223 |
ctatgcaaatatcaatggaacatttttagatttgaagaatcaaattagcagtcaaagcaagcactttgccacatcacaa---caagccataggagaggta |
319 |
Q |
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| T |
28833033 |
ctatgaaaacatcaacgaaacttttctagatttgagaaatcaaattagcaatcaaagcaagcactttgccacatcacaacaacaagccatagatgaggta |
28833132 |
T |
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| Q |
320 |
attgtattttctatgtttcaatgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtaattgctcagctg |
419 |
Q |
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| T |
28833133 |
aaagtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacactgcttctaccgaaatcagtacctgc---gctt |
28833229 |
T |
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| Q |
420 |
ctaatggagctagagtcatctatgatggctgcttcctcaggtatgtgcatatg |
472 |
Q |
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| T |
28833230 |
ccattggggctagatttatctacgatgggtgtttcctcaggtatgtccatatg |
28833282 |
T |
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