View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_11 (Length: 492)
Name: NF17813_low_11
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Complemental strand, 30961748 - 30961291
Alignment:
| Q |
21 |
tatatgactaatcttcaaagagaagcacaaaggaagattaagaggattagtgaagagtaaaggaataattacttttgttgaagagagggtaatgtgaagg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961748 |
tatatgactaatcttcaaagagaagcacaaaggaagattaagaggattagtgaagattaaaggaataattacttttgttgaagagagggtaatgtgaagg |
30961649 |
T |
|
| Q |
121 |
catcaacctctaatcaaaaggactatgagaaggaagaggatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatat |
220 |
Q |
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| T |
30961648 |
catcaacctctaatcaaaaggactatgagaaggaagaggatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatat |
30961549 |
T |
|
| Q |
221 |
aatcaagaaaggatagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgatctagaaacatgcttacattg |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30961548 |
aatcaagaaaggatagggaggaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaaggaaggttgatctagaaacatgcttacattg |
30961449 |
T |
|
| Q |
321 |
agagcaataagtggaacaaaatttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacag |
420 |
Q |
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| T |
30961448 |
agagcaataagtggaacaaaatttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacag |
30961349 |
T |
|
| Q |
421 |
tgggatcaactacaaaaagagaggggatcacatcttgctgttaatcttatcatgaatg |
478 |
Q |
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| T |
30961348 |
tgggatcaactacaaaaagagaggggatcacatcttgctgttaatcttatcatgaatg |
30961291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 405
Target Start/End: Original strand, 38784324 - 38784538
Alignment:
| Q |
196 |
atggaggaagacttagaaattatataatcaagaaagga----tagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaggg |
291 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||| ||| || ||| |||||||||||||||| |||||| || |||||||||| |||||||| |
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| T |
38784324 |
atggaggaagacttagaaac-atgtaatcaacaaaggaggattagagaggaagaataactttggaagaacaagaaatttaaaattcctaaattttaagga |
38784422 |
T |
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| Q |
292 |
aaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaa |
388 |
Q |
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||||||||||| |||||||| |||| ||| ||||| | || ||||||||| |||||||||||| ||| ||| |||||||| |||||||||||||||||| |
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| T |
38784423 |
aaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaattta-gggaggaatggaaagtgaagttagcaa |
38784521 |
T |
|
| Q |
389 |
cttttgagttcacaaat |
405 |
Q |
| |
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|||| ||||||||||| |
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| T |
38784522 |
ctttgaagttcacaaat |
38784538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 405
Target Start/End: Complemental strand, 38742132 - 38741988
Alignment:
| Q |
263 |
agaaacttgaaattcctaatttttaagggaaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagtt |
359 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||| | |||||||| |||| ||| ||||| | |||||||||||| |||||||||||| |||||| |
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| T |
38742132 |
agaaacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagttaccatgaagtt |
38742033 |
T |
|
| Q |
360 |
aggggaggaaaggaaagtgaagttagcaacttttgagttcacaaat |
405 |
Q |
| |
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| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
38742032 |
a-gggaagaatggaaagtgaagttagcaactttgaagttcacaaat |
38741988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 305
Target Start/End: Original strand, 38790437 - 38790667
Alignment:
| Q |
87 |
aattacttttgttgaagagagggtaatgtgaaggcatcaacctctaa-tcaaaaggactat--gagaaggaagaggatgaggctcctagggagtatagga |
183 |
Q |
| |
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||||||||| ||| |||| |||||||||||||| |||||||||| || ||||||||||||| ||| ||||||| |||||| |||| ||||||||| || |
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| T |
38790437 |
aattactttggttaaagaaagggtaatgtgaagtcatcaacctccaagtcaaaaggactatatgaggaggaagatgatgagactccaagggagtat--ga |
38790534 |
T |
|
| Q |
184 |
gtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggat-------------agggaagaaaaataactttggaagaaaaagaaactt |
270 |
Q |
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| T |
38790535 |
ggcataggagacattgagaaagacttaaaaac-atgtaatcaagaaaggatgattagggtctctagggaggaagaataactttggaagaaaaagaaactt |
38790633 |
T |
|
| Q |
271 |
gaaattcctaatttttaagggaaggttgatctaga |
305 |
Q |
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|||||||| | |||||||||||||||||| |||| |
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| T |
38790634 |
-aaattccttacttttaagggaaggttgatataga |
38790667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 34081577 - 34081629
Alignment:
| Q |
248 |
aactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgat |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
34081577 |
aactttggaagaaaaagaaacttaaaattcctaatttccaaaggaaggttgat |
34081629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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