View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_12 (Length: 412)
Name: NF17813_low_12
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 12976892 - 12977230
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaacagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
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| T |
12976892 |
gtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
12976991 |
T |
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| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattagatcctttgg |
205 |
Q |
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| T |
12976992 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttgg |
12977091 |
T |
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| Q |
206 |
aaatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattttcttgcttgaaagtaataaaaacattaaatttagatgcc |
305 |
Q |
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| T |
12977092 |
aaatacaagtcagagaagtgtttcatagaattgttcatggtagaatggaagggcttgattctcttgcttgagagtaataaaaacattagatttagatgcc |
12977191 |
T |
|
| Q |
306 |
ataaacttgatggaataaccataaaagatatagttatgt |
344 |
Q |
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| T |
12977192 |
ataaacttgatggaataaccataaaagatttagttatgt |
12977230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 13009291 - 13009623
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaacagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
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| T |
13009291 |
gtcgaagaagagggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
13009390 |
T |
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| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattagatcctttgg |
205 |
Q |
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| T |
13009391 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttgg |
13009490 |
T |
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| Q |
206 |
aaatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattttcttgcttgaaagtaataaaaacattaaatttagatgcc |
305 |
Q |
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| T |
13009491 |
aaagacaagttagagaagtatttcatagaattgttcgtggtagaatggaagggcttgattctgtttcttaaaagtaattaaaacattagatttagatgcc |
13009590 |
T |
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| Q |
306 |
ataaacttgatggaataaccataaaagatatag |
338 |
Q |
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| T |
13009591 |
ataaacttgatggaacaaccataaaagatatag |
13009623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 13012849 - 13013233
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaacagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
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||||||||| | ||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13012849 |
gtcgaagaagagggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtg |
13012948 |
T |
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| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattagatcctttgg |
205 |
Q |
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| T |
13012949 |
gaatttcctttgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcg |
13013048 |
T |
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| Q |
206 |
aaatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattttctt-gcttgaaagtaataaaaacattaaatttagatgc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||||||| |
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| T |
13013049 |
taatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattgtctttgcttgagagtaataaaaacattagatttagatgc |
13013148 |
T |
|
| Q |
305 |
cataaacttgatggaataaccataaaagatatagttatgtnnnnnnnnnnnnncttaatatacataaattgtatagagtttgtaaccc |
392 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
13013149 |
cataatcttgatggaataaccataaaagatatagttatgtaaaaaaaaac---cttaacatacataaattgtatagagtttgtaaccc |
13013233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 13031649 - 13031934
Alignment:
| Q |
6 |
gtcgaagaatatggagaggaagaattgttgcggacttttgaaggagattcaacagattgagaagtgtgctagggggatgaatgaattggctgattctttg |
105 |
Q |
| |
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||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13031649 |
gtcgaagaagagggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttg |
13031748 |
T |
|
| Q |
106 |
gaatttcctttgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattagatcctttgg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
13031749 |
cggtttcctttgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttgg |
13031848 |
T |
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| Q |
206 |
aaatacaagtcagagaagtgtttcatagaattgttcgtggtagaatggaagggcttgattttcttgcttgaaagtaataaaaacat |
291 |
Q |
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||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| || | |||||||||||||| |
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| T |
13031849 |
aaagacaagttagagaagtgtttcatagaattgtttgtggtagaatggaagggcttgattcctttggttcagagtaataaaaacat |
13031934 |
T |
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