View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_14 (Length: 396)
Name: NF17813_low_14
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 5949143 - 5948770
Alignment:
| Q |
12 |
agcacagagggttctaagataacataaacataaactgcatatactactatactgccttaaagctattagcagggtttgattattgatcatatatcacctc |
111 |
Q |
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| T |
5949143 |
agcacagagggttctaagataacataaacataaactgcatatactactaaactgccttaaagctattagcagggtttgattattgatcatatatcacctc |
5949044 |
T |
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| Q |
112 |
ttataataatta---gttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatca |
208 |
Q |
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| T |
5949043 |
ttataataattattagttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccgtctttattggcatca |
5948944 |
T |
|
| Q |
209 |
gctttcatcaaacaacgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttat |
308 |
Q |
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| T |
5948943 |
gctttcatcaaacaacgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaacgaccatcgttat |
5948844 |
T |
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| Q |
309 |
tgatatccgccttttctaatttttcgataatgttcctttcgaagttgatttggtccatagacaccctctttggt |
382 |
Q |
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| T |
5948843 |
tgatatccgccttttctaatttttcgataatgttcctttcgaagttgatttggtccatagacaccctctttggt |
5948770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 5954770 - 5954417
Alignment:
| Q |
31 |
taacataaacataaactgcatata--ctactata--ctgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataattagtt |
126 |
Q |
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| T |
5954770 |
taacataaacacaaactgcatatatactactatatactgcattaaagctattagcatgatttgattattgatcatatatcacctctta--ataattagtt |
5954673 |
T |
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| Q |
127 |
cttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacga |
226 |
Q |
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| T |
5954672 |
cttgccaaaaccacgggtaaggagataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatcagctttcatgaaacaaaat |
5954573 |
T |
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| Q |
227 |
ttggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttattgatatccgccttttcta |
326 |
Q |
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| T |
5954572 |
atggctctcaatccagggtagtaagaacctaaatcctttagagcttttttgagctcttcctttgtgtaacgaccgtcgttattgatatctgctttttcca |
5954473 |
T |
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| Q |
327 |
atttttcgataatgttcctttcgaagttgatttggtccatagacaccctctttggt |
382 |
Q |
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| T |
5954472 |
atttttcgataatgttcctttcgaagttgatttgatccatagacactctctttggt |
5954417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 125 - 379
Target Start/End: Complemental strand, 5937836 - 5937582
Alignment:
| Q |
125 |
ttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaac |
224 |
Q |
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| T |
5937836 |
ttctttccaaaaccacgggtaaggagataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagctttaaccaaacaac |
5937737 |
T |
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| Q |
225 |
gattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttattgatatccgccttttc |
324 |
Q |
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| T |
5937736 |
gattggccctccatccaggatagtaagaacctaaatcttttagagctttttttagctcttcttttgtgtaacgaccgtcgttattgatatctgccttttc |
5937637 |
T |
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| Q |
325 |
taatttttcgataatgttcctttcgaagttgatttggtccatagacaccctcttt |
379 |
Q |
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| T |
5937636 |
caatttttctattatttttctttcaatgttgatttgatccataggcactctcttt |
5937582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 5960894 - 5960800
Alignment:
| Q |
149 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacgattggctctccatccagg |
243 |
Q |
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| T |
5960894 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaacattgaccatacaacgcatggctctccatccagg |
5960800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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