View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_15 (Length: 380)
Name: NF17813_low_15
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 46721303 - 46721660
Alignment:
| Q |
16 |
gagagaagagtgaagcgtgaatgctaagtcaat----gatagagggatagccgt---aagtagtgtgtgcgtgatttttaagtaaactcagaaacctaat |
108 |
Q |
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| T |
46721303 |
gagagaagagtgaagcgtgaatgctaagtcaatcaatgatagagggatagccgttataagtagtgtgtgcgtgatttttaagtaaactcagaaacctaat |
46721402 |
T |
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| Q |
109 |
aagataatcgatcttaagtcgtgcatgcatgcgtg--ttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcttgcgttattt |
206 |
Q |
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|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46721403 |
aagataatcgatattaagtcgtgcatgcatgcatgcgttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcctgcgttattt |
46721502 |
T |
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| Q |
207 |
caaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46721503 |
caaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatgg |
46721602 |
T |
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| Q |
307 |
taattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgct |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46721603 |
taattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgct |
46721660 |
T |
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