View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_2 (Length: 678)
Name: NF17813_low_2
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Complemental strand, 3880154 - 3879491
Alignment:
| Q |
1 |
aacttcaatcaataagttatggtacagctggattagttgattatataaaaaacaattagaattgtgtaaaagggatcaagagtaggaaaacacttatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880154 |
aacttcaatcaataagttatggtacagctggattagttgattatataaaaaacaattagaattgtgtaaaagggatcaagagtaggaaaacacttatttg |
3880055 |
T |
|
| Q |
101 |
aattgtcagaatatactactatactaacatagctcatgaataatcaaattttggaaaataaatccagaaattcaaaagaaatatttgttcatgtacctca |
200 |
Q |
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| T |
3880054 |
aattgtcagaatatactactatactaacatagctcatgaataatcaaattttggaaaataaatccagaaattcaaaagaaatatttgttcatgtacctca |
3879955 |
T |
|
| Q |
201 |
caataatccagaactagtgatttcaacataggacatcctccaccatcaccaaaaacaccacatatagaatttgtcaaagattcacactca--gagatcca |
298 |
Q |
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| T |
3879954 |
caataatccagaactagtgatttcaacataggacatcctccaccatcaccaaaaacatcacatatagaatttgtcaaagattcacactcagagagatcca |
3879855 |
T |
|
| Q |
299 |
cttattggaaagattggcattgcaatgctaatgaagttaagctatcctgtttttgcagtgctaatttctgcatatactctagaatatatgagaatgggga |
398 |
Q |
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| T |
3879854 |
cttcttggaaagattggcattgcaatgctaatgaagttaagctatcctgcttttgcagtgctaatgtctgcatatactctagaatatatgagaatgggga |
3879755 |
T |
|
| Q |
399 |
atgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtataga |
498 |
Q |
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| T |
3879754 |
atgaaacaagacataagtataagtgtataacacatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtataga |
3879655 |
T |
|
| Q |
499 |
agaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcnnnnnnntaaattaggcgcaacaatagaaaaaaggatttggtatt |
598 |
Q |
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| T |
3879654 |
agaaagcgatatagccctcaagttcaaatctgctaatctgcaaaggaaaccattcaaaaaaataaattaggcgcaacaatagaaaaaaggatttggtatt |
3879555 |
T |
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| Q |
599 |
gacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgctttt |
662 |
Q |
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| T |
3879554 |
gacttaaacagaaagtgaaaagcaatagagagagacggatcaataatagaattatagtgctttt |
3879491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 188 - 372
Target Start/End: Complemental strand, 3865991 - 3865805
Alignment:
| Q |
188 |
ttcatgtacctcacaataatccagaactagtgatttcaacataggacatcctccaccatcaccaaaaacaccacatatagaatttgtcaaagattcacac |
287 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| || |||||||| ||||||||| |
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| T |
3865991 |
ttcatgtacctcacaattatcaagaactagtgatttcaacatgggacatcctccaccgtcactaaaaacatcacatacagtgtttgtcaatgattcacac |
3865892 |
T |
|
| Q |
288 |
tcagaga--tccacttattggaaagattggcattgcaatgctaatgaagttaagctatcctgtttttgcagtgctaatttctgcata |
372 |
Q |
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| T |
3865891 |
tcagagaggtccacttcttgtaaagattggcattgcagcgctaatgtagttaagctatcctgcttttgcagtgctaatttctgcata |
3865805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 430 - 553
Target Start/End: Complemental strand, 3865732 - 3865609
Alignment:
| Q |
430 |
acatacttgaagtgaatttgaagtgatattgatccggtgaagtacagagcagtcagacacttgtatagaagaaagcgatatagccctcaagttcaaatct |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3865732 |
acatacttgaagtgaatttgaagtgatattgatccggtggagtacagagcagttagacacttgtatagaagaaagcgatatagctctcaaattcaaatct |
3865633 |
T |
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| Q |
530 |
gctaatctgcaaaggaaaccattc |
553 |
Q |
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| T |
3865632 |
gctaatctgccaaggaaaccattc |
3865609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 3866160 - 3866120
Alignment:
| Q |
52 |
acaattagaattgtgtaaaagggatcaagagtaggaaaaca |
92 |
Q |
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| T |
3866160 |
acaattagaattgtgtagaaaggatcaagagtgggaaaaca |
3866120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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