View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_20 (Length: 337)
Name: NF17813_low_20
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 377467 - 377156
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
377467 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaat |
377368 |
T |
|
| Q |
111 |
attaatggttccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
377367 |
attaatggttccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagtt |
377268 |
T |
|
| Q |
211 |
atagtatctcttccggctacaaagagattgaaagcagcatctcttagaaacttgtggtcatgttgtactacttgtgatcccttctcttgattcatcaaag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
377267 |
atagtatctcttccggctacaaagagattgaaagcagcatctcttagaaacttgtcgtcatgttgtactacttgtgatcccttctcttcattcatcaaag |
377168 |
T |
|
| Q |
311 |
tggttaacaaat |
322 |
Q |
| |
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|||||||||||| |
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| T |
377167 |
tggttaacaaat |
377156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 347035 - 347343
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaat |
110 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||| || |||||| ||||||| |||| |
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| T |
347035 |
caaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcataaatccctaatttctttt---caat |
347131 |
T |
|
| Q |
111 |
attaatggttccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagtt |
210 |
Q |
| |
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|||||||| ||||||| ||||||||||| ||||||||||| | || |||||||| |||||||||| ||||| || | ||||||||||||||||||| |
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| T |
347132 |
gttaatggtcccaaaattttctttaatctgctcaagaatcttagcctccactaaagggtgtgtagcaataagatataaaagccatgtaagcgctgaagtt |
347231 |
T |
|
| Q |
211 |
atagtatctcttccggctacaaagagattgaaagcagcatctcttagaaacttgtggtcatgttgtactacttgtgatcccttctcttgattcatcaaag |
310 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || |||||||||||||||| | |||||| |||||||||||| |||||||||| |||||||||| |
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| T |
347232 |
atagtatctctcccggctacaaaaagattgaatgcgacatctcttagaaacttatcatcatgtactactacttgtgagcccttctcttctttcatcaaag |
347331 |
T |
|
| Q |
311 |
tggttaacaaat |
322 |
Q |
| |
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| |||| ||||| |
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|
| T |
347332 |
ttgttagcaaat |
347343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 355694 - 356002
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaat |
110 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||| |||| |
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| T |
355694 |
caaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagataaactagctttttcaactcatcaatccctaatttctttt---caat |
355790 |
T |
|
| Q |
111 |
attaatggttccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagtt |
210 |
Q |
| |
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||| ||||| ||||||| |||||||||||| ||||||||||| | || |||||||| |||||||||| |||||| || | ||||||||||||||||||| |
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| T |
355791 |
attgatggtcccaaaattttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagtt |
355890 |
T |
|
| Q |
211 |
atagtatctcttccggctacaaagagattgaaagcagcatctcttagaaacttgtggtcatgttgtactacttgtgatcccttctcttgattcatcaaag |
310 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||| |||| || | |||||| | ||||| |||||||||||| ||||| |||| |||||||||| |
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|
| T |
355891 |
atagtatctctccccgctacaaagagattgaatgcaacatccctcaaaaacttatcatcatgcattactacttgtgaccccttttcttctttcatcaaag |
355990 |
T |
|
| Q |
311 |
tggttaacaaat |
322 |
Q |
| |
|
| |||| ||||| |
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|
| T |
355991 |
ttgttagcaaat |
356002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 341751 - 341500
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaacccctaacttcttttgatcaat |
110 |
Q |
| |
|
|||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| | ||| || | | | |
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|
| T |
341751 |
caaaaggtattggtggaaaaagccttaatgcctcacatatagcaccatgaagataaacaagctttttcacatcatcaacacttaaaatccaaggct---t |
341655 |
T |
|
| Q |
111 |
attaatggttccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagtt |
210 |
Q |
| |
|
| || ||| |||| |||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |||||||||||| |||||| |
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|
| T |
341654 |
ctctttgtatccgaaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatgtaagcgcagaagtt |
341555 |
T |
|
| Q |
211 |
atagtatctcttccggctacaaagagattgaaagcagcatctcttagaaacttgt |
265 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
341554 |
atggtatctcttccagctacaaagagattgaatgcagcatctcttagaaacttgt |
341500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 337607 - 337462
Alignment:
| Q |
120 |
tccaaaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagttatagtatct |
219 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||| ||| || |||||||||||||| || ||||||||||||||||||||||| |||||||| |||||| |
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| T |
337607 |
tccaaaattttcttttatctcttcaacaatcttggcttccaccaaaggatgtgtagcgacaagataaaataaccatgtaagcgcggaagttatggtatct |
337508 |
T |
|
| Q |
220 |
cttccggctacaaagagattgaaagcagcatctcttagaaacttgt |
265 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
337507 |
ctccccgctacaaagagattgaatgcagcatctcttagaaacttgt |
337462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 333326 - 333208
Alignment:
| Q |
147 |
aatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagttatagtatctcttccggctacaaagagattgaaagca |
246 |
Q |
| |
|
|||||||| ||| || |||||||||||||| || |||||||||||||||||||| || |||||||| |||||||| || ||||||||||||||||| ||| |
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|
| T |
333326 |
aatcttggcttccaccaaaggatgtgtagcgacaagataaaataaccatgtaagggcggaagttatggtatctctccccgctacaaagagattgaatgca |
333227 |
T |
|
| Q |
247 |
gcatctcttagaaacttgt |
265 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
333226 |
gcatctcttagaaacttgt |
333208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 337713 - 337635
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcacttcatcaac |
89 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||||| || ||||||||||| ||||| ||||| |||||||| |
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|
| T |
337713 |
caaaaggtataggcggaaaaagccttaacgcctcacatatagcgccgtgaagataaacaagctttttcacctcatcaac |
337635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 12963872 - 12963809
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagctt |
74 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
12963872 |
caaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagctt |
12963809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 19279165 - 19279102
Alignment:
| Q |
11 |
caaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagctt |
74 |
Q |
| |
|
|||| |||| ||| ||| ||||||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
19279165 |
caaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagctt |
19279102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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