View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_25 (Length: 261)
Name: NF17813_low_25
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41900997 - 41901235
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
100 |
Q |
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| T |
41900997 |
ataagaagcataagttctaacccaatgccttgtcacacttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
41901096 |
T |
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| Q |
101 |
aaagctgttaacattaatttaaaa-acaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
199 |
Q |
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| T |
41901097 |
aaagctgttaatattgatttaaaaaacaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
41901196 |
T |
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| Q |
200 |
tggaagcagaatatggtcctcctttcttgacactgtgcc |
238 |
Q |
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| T |
41901197 |
tggaagcagaatacggtcctcctttcttgacactgtgcc |
41901235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41895945 - 41896190
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaat---tgatgtattgggctgcaatttgaggtg |
97 |
Q |
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| T |
41895945 |
ataagaagcataagttctaacccagtgccttgtcatccttgtcctcaggatcatatgacttaggaaaaataattgatgtattgggctgcaatttgaggtg |
41896044 |
T |
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| Q |
98 |
attaaagctgttaacatta-atttaaaaaca-------atattagta------aaaacaagtgaactaccggattaagcaaggacttgtatggtttgtca |
183 |
Q |
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| T |
41896045 |
attaaagctgttaatatttgattcaaaaacagttttttatattaatataaagaaaaacaagtgaattaccggattaaggaaagacttgtatggtttgtca |
41896144 |
T |
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| Q |
184 |
tcaattagcaaggtattggaagcagaatatggtcctcctttcttga |
229 |
Q |
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| T |
41896145 |
tcgatcagcaacgtatttgaagcagaatacggtcctcctttcttga |
41896190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 41891125 - 41891220
Alignment:
| Q |
136 |
aaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgaca |
231 |
Q |
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| T |
41891125 |
aaaaacatgtgcattaacggattaaggaaggacctgtatggtctggcatcaatcatcaaggtatttgaagcagaatatggacatcctttcttgaca |
41891220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 34454271 - 34454209
Alignment:
| Q |
168 |
cttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
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| T |
34454271 |
cttgtatggtttgtcatcaatcatcaaagtattagaagcagaatatggacctcctttcttgac |
34454209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 41885112 - 41885185
Alignment:
| Q |
154 |
ggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttctt |
227 |
Q |
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| T |
41885112 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcttttctt |
41885185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 41829544 - 41829477
Alignment:
| Q |
163 |
aaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
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| T |
41829544 |
aaggacttatatgctttgtcatcaatcatcaaagtattagaaggagaatatgagcctcctttcttgac |
41829477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 41891019 - 41891064
Alignment:
| Q |
6 |
aagcataagttctaacccaatgccttgtcacgcttgtccactggat |
51 |
Q |
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| T |
41891019 |
aagcataagttctaacccagtgctttgtcacccttgtcctctggat |
41891064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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