View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_26 (Length: 241)
Name: NF17813_low_26
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 41083366 - 41083162
Alignment:
| Q |
13 |
gtgagatgaagtctacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
112 |
Q |
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| T |
41083366 |
gtgagatgaagactacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
41083267 |
T |
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| Q |
113 |
catgactcgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaac |
212 |
Q |
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| T |
41083266 |
cgtgacttgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggataggctctaataacatgtttgaatttgtgattgagtttaac |
41083167 |
T |
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| Q |
213 |
acaac |
217 |
Q |
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| T |
41083166 |
acaac |
41083162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 45089521 - 45089620
Alignment:
| Q |
123 |
gtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaacacaaccttac |
222 |
Q |
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| T |
45089521 |
gtggtccgatagggaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttgtgagtaagttttacacaatcttac |
45089620 |
T |
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