View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_28 (Length: 225)
Name: NF17813_low_28
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 6355927 - 6356120
Alignment:
| Q |
14 |
aatatcaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttc |
113 |
Q |
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| T |
6355927 |
aataccaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttc |
6356026 |
T |
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| Q |
114 |
aacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaa |
207 |
Q |
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| T |
6356027 |
aacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatatggtaaatgaaagaaa |
6356120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 7463037 - 7463223
Alignment:
| Q |
23 |
ggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttcaacttttgg |
122 |
Q |
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| T |
7463037 |
ggcaccaccaatgatacctgtagggttattagttgcagttagggcatcaatgtccaacgcattcttttgcatcaacaccacagttcccttcaacttttgg |
7463136 |
T |
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| Q |
123 |
cctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaatg |
209 |
Q |
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| T |
7463137 |
cctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatattacactatatttggtaaatgaaagaaatg |
7463223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 6365430 - 6365550
Alignment:
| Q |
83 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
182 |
Q |
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| T |
6365430 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatcttt---aatgc-ttaaatgtatta |
6365525 |
T |
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| Q |
183 |
cactatatttggtaaatgaaagaaa |
207 |
Q |
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| T |
6365526 |
cactatctttggtaaatgaaagaaa |
6365550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 6426643 - 6426680
Alignment:
| Q |
83 |
attcttttgcatcaacaccacagttcccttcaactttt |
120 |
Q |
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| T |
6426643 |
attcttttgcatcaacaccacagttccctttaactttt |
6426680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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