View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_29 (Length: 220)
Name: NF17813_low_29
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 12600235 - 12600415
Alignment:
| Q |
20 |
cacttctatgtttttgtaggaaacagaacctgtaaatgacttggttttgaagtttgcaaagcatttgacttttcgtcagtactgattctttaaaaaggat |
119 |
Q |
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| T |
12600235 |
cacttctatgtttttgtaggaaacagaacctgtaaatgacttggttttgaagtttgcaaagcatttgacttttcgtcagtactgattctttaaaaaggat |
12600334 |
T |
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| Q |
120 |
gaagaaactgaaacttttacaacttgatcatgtcgacctcactagagattataagtgtctttctaatgacccgagacgagt |
200 |
Q |
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| T |
12600335 |
gaagaaactgaaacttttacaacttgatcatgttgacctcactagagattataagtgtctttctaatgactcgagacgagt |
12600415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 15806468 - 15806291
Alignment:
| Q |
20 |
cacttctatgtttttgtaggaaacagaacctgtaaatgacttggttttgaagtttgcaaagcatttgacttttcgtcagtactgattctttaaaaaggat |
119 |
Q |
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| T |
15806468 |
cacttctatgtttttgtaggaaacagaacctgtaaatgacttggctttgaagtttgcaaagcatttaacttttcgtcagtactgattctttaaaaaggat |
15806369 |
T |
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| Q |
120 |
gaagaaactgaaacttttacaacttgatcatgtcgacctcactagagattataagtgtctttctaatgacccgagacga |
198 |
Q |
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| T |
15806368 |
gaagaaac-gagacttttacaacttgatcatgtcgacctcactagagattataagtgtctttctaatgacctgagacga |
15806291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 30417261 - 30417313
Alignment:
| Q |
117 |
gatgaagaaactgaaacttttacaacttgatcatgtcgacctcactagagatt |
169 |
Q |
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| T |
30417261 |
gatgaagaaactgagacttttacaacttgattgtgttgacctcactggagatt |
30417313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 3321440 - 3321280
Alignment:
| Q |
38 |
ggaaacagaacctgtaaatgacttggttttgaagtttgcaaagcatttgacttttcgtcagtactgattctttaaaaaggatgaagaaactgaaactttt |
137 |
Q |
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| T |
3321440 |
ggaaacagaaactgtagatgacttggttttgaagtt-gcagagaagtaaactttttttcgttaccgattctttaaagaggatgaagaaaatgagactttt |
3321342 |
T |
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| Q |
138 |
acaacttgatcatgtcgacctcactagagattataagtgtctttctaatgacccgagacgag |
199 |
Q |
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| T |
3321341 |
acaacttgatcatgtggacctcactagagattataagtgtctttctaatgacctgagacgag |
3321280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 3367259 - 3367158
Alignment:
| Q |
98 |
gtactgattctttaaaaaggatgaagaaactgaaacttttacaacttgatcatgtcgacctcactagagattataagtgtctttctaatgacccgagacg |
197 |
Q |
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| T |
3367259 |
gtactggttctttcaaagggatgaagagactgagactttttcaatttgatcatgtcgacctcactagagattttaagtgtttttctaatgacctgagacg |
3367160 |
T |
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| Q |
198 |
ag |
199 |
Q |
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|| |
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| T |
3367159 |
ag |
3367158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 3387868 - 3388004
Alignment:
| Q |
23 |
ttctatgtttttgtaggaaacagaacctgtaaatgacttggttttgaagtttgcaaagcatttgacttttcgtcagtactgattctttaaaaaggatgaa |
122 |
Q |
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| T |
3387868 |
ttctttgtttttataggggacagaaactgtagatgacttggttttgaagtt-gcagagaagtaaacttttcttcagtactgattctttaaagaggatgaa |
3387966 |
T |
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| Q |
123 |
gaaactgaaacttttacaacttgatcatgtcgacctca |
160 |
Q |
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| T |
3387967 |
gaaactgagtctgtcacaacttgatcatgtcaacctca |
3388004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 3408079 - 3408028
Alignment:
| Q |
118 |
atgaagaaactgaaacttttacaacttgatcatgtcgacctcactagagatt |
169 |
Q |
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| T |
3408079 |
atgaagaaacttagacttttacaacttgatcgtgttgacctcactggagatt |
3408028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 3325758 - 3325705
Alignment:
| Q |
97 |
agtactgattctttaaaaaggatgaagaaactgaaacttttacaacttgatcat |
150 |
Q |
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| T |
3325758 |
agtactgattctttcaaggagatgaagaaactgagacttttgcaacttgatcat |
3325705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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