View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17813_low_4 (Length: 532)

Name: NF17813_low_4
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17813_low_4
NF17813_low_4
[»] chr3 (38 HSPs)
chr3 (17-356)||(23401466-23401806)
chr3 (167-380)||(23469075-23469289)
chr3 (167-380)||(23454609-23454823)
chr3 (167-380)||(23352491-23352705)
chr3 (167-380)||(23479133-23479347)
chr3 (377-520)||(23469314-23469457)
chr3 (167-380)||(23440465-23440679)
chr3 (167-380)||(23447844-23448058)
chr3 (167-380)||(23472994-23473208)
chr3 (167-380)||(23499612-23499826)
chr3 (172-380)||(23463836-23464045)
chr3 (167-380)||(23405200-23405414)
chr3 (173-380)||(23386832-23387040)
chr3 (436-520)||(23401804-23401888)
chr3 (166-347)||(23398488-23398670)
chr3 (17-165)||(23351250-23351398)
chr3 (385-473)||(23440711-23440799)
chr3 (170-380)||(35768708-35768919)
chr3 (385-471)||(23448090-23448176)
chr3 (385-471)||(23473240-23473326)
chr3 (383-470)||(23352735-23352822)
chr3 (385-471)||(23499858-23499944)
chr3 (17-142)||(23468182-23468307)
chr3 (385-520)||(23387072-23387205)
chr3 (17-165)||(23462578-23462726)
chr3 (17-165)||(23477853-23478001)
chr3 (17-165)||(23498302-23498450)
chr3 (385-471)||(23479379-23479465)
chr3 (20-137)||(23471691-23471808)
chr3 (17-165)||(23403959-23404107)
chr3 (17-165)||(23446553-23446701)
chr3 (385-470)||(23454855-23454940)
chr3 (17-165)||(23439152-23439300)
chr3 (17-165)||(23453329-23453477)
chr3 (385-470)||(23405446-23405531)
chr3 (167-286)||(36003087-36003206)
chr3 (385-467)||(23464077-23464159)
chr3 (17-132)||(23382815-23382930)
[»] scaffold0201 (3 HSPs)
scaffold0201 (167-381)||(11995-12210)
scaffold0201 (383-519)||(12239-12373)
scaffold0201 (17-165)||(10723-10871)
[»] chr4 (1 HSPs)
chr4 (175-316)||(12896270-12896412)
[»] chr2 (2 HSPs)
chr2 (175-278)||(16122319-16122422)
chr2 (175-278)||(16336778-16336881)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 23401466 - 23401806
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23401466 aagtttgctattacgccaaatcgatgaaggcaattcatgtatagcagtgccatgtaaggacaaatgtatcattttctctgatgttactgaaaattcaatg 23401565  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaaattttggagctttttcaattcattttcgcatgcttccttgcttcttgaact 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  23401566 agagatgaacagccatcaagtaagagtttccagagggattttgaatgaaattttggagctttttcaattcatttttgcatgcttcctagctccttgaact 23401665  T
Q  217 cggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatc-tcatatccagttttaggatgtttttct 315  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23401666 cggattttcacctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatcttcatatccagttttaggatgtttttct 23401765  T
Q  316 cagaagacagtcaaactcaatagatgaagagaatcatgttt 356  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  23401766 cagaagatagtcaaactcaatagatgaagagaatcatgttt 23401806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23469075 - 23469289
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  23469075 ttttggagcattttcaattcattgtcccatgcttccttgcttcttgaactcggatttgcacctaaaacttttatagccagaggattgcctttgcaatagg 23469174  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  23469175 caattacactctctgatagatcttcatatccaattttaggatgtttttctccgaagatagtcaaactcaatagttgaagagaatcatgtttgttcaattc 23469274  T
Q  366 cttaacctcatatat 380  Q
    |||||||||| ||||    
T  23469275 cttaacctcacatat 23469289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23454609 - 23454823
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||||||||||||||||||||||||| ||| | || |||| |||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  23454609 ttttggagctttttcaattcattttcccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcctttgcaatagg 23454708  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||| |||| ||||||||| || ||||| ||    
T  23454709 caattacactctctgatagatcttcatatccaattttaggatgtttttccttgaagacagtcaaactgaatagctgaaaagaatcatgattattcaattc 23454808  T
Q  366 cttaacctcatatat 380  Q
    ||||||||| |||||    
T  23454809 cttaacctcgtatat 23454823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23352491 - 23352705
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    ||||| |||||||||||||||||||  ||| |||  || | |||||||||| |||| |||||||||||||||| ||||||  ||||||||| ||||||||    
T  23352491 ttttgtagctttttcaattcatttttccattcttttttccctcttgaactcagattagcacctaaaacttttaaagccagcggattgccttggcaatagg 23352590  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    ||||||||| |||||||||||| ||||||||| | |||||||| ||||||| |||| ||| |||||  ||||| |||||||||||| |||||||||| ||    
T  23352591 caattacacgttctgatagatcttcatatccaatattaggatgcttttctctgaaggcagacaaacagaatagctgaagagaatcacgtttgttcaattc 23352690  T
Q  366 cttaacctcatatat 380  Q
    |||||||||||||||    
T  23352691 cttaacctcatatat 23352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23479133 - 23479347
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||||||||||||||||||||||||| || ||||| | ||  ||||||||  |||| ||||||||||||||||  |||||| | || |||||||||||||    
T  23479133 ttttggagctttttcaattcattttcccacgcttcttggccccttgaactgagatttgcacctaaaacttttaatgccagagggttacctttgcaatagg 23479232  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||  |||| |||||||||| ||||| |||| ||||||||| |||||||| ||    
T  23479233 caattacactttctgatagatcttcatatccaattttaggttgtttttctttgaaggcagtcaaactgaatagctgaaaagaatcatgcttgttcaattc 23479332  T
Q  366 cttaacctcatatat 380  Q
     |||| |||||||||    
T  23479333 tttaagctcatatat 23479347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 377 - 520
Target Start/End: Original strand, 23469314 - 23469457
Alignment:
Q  377 atatgagtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctaca 476  Q
    ||||| |||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  23469314 atatgtgtttatatctagttgtaataatgaccccactacccggtgccagtccatcaatttttagcataagatcttctatttgctctacagtttctctaca 23469413  T
Q  477 ctatccagcacaatgaaagattctttacgtgcaattcttctcac 520  Q
    ||||||||||||||| || |||||||||||||||| ||||||||    
T  23469414 ctatccagcacaatgtaaaattctttacgtgcaatccttctcac 23469457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23440465 - 23440679
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23440465 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagattttcccctaaaacttttaaagccagaggattgcctttgcaatagg 23440564  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||||||||||||||| ||| ||||| ||||||  |||||||||| |||| || ||||||| | ||| |||||||||||||| |||||||| ||    
T  23440565 caattacactttctgatagatcttcacatccaattttagactgtttttctccgaaggcattcaaactgagtagctgaagagaatcatggttgttcaattc 23440664  T
Q  366 cttaacctcatatat 380  Q
    ||| |||||||||||    
T  23440665 cttgacctcatatat 23440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23447844 - 23448058
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23447844 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23447943  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||  |||| || ||||||| ||||| |||||||||||| | || |  || ||    
T  23447944 caattacactatctgatagatcttcatatccagttttaggatgtttttctttgaaggcaatcaaactgaatagctgaagagaatcaggcttctctaattc 23448043  T
Q  366 cttaacctcatatat 380  Q
    |||||||||||||||    
T  23448044 cttaacctcatatat 23448058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23472994 - 23473208
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23472994 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagatttacccctaaaacttttaaagccagaggattgcctttgcaatagg 23473093  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||| || ||||||| ||||| |||||||||||||| |||||||| |     
T  23473094 caattacactttctgatagatcttcatatccaattttaggctgttttcctccgaaggcattcaaactgaatagctgaagagaatcatgattgttcaatta 23473193  T
Q  366 cttaacctcatatat 380  Q
    | | |||||||||||    
T  23473194 catgacctcatatat 23473208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23499612 - 23499826
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23499612 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23499711  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||  |||| |||||||||| ||||| |||||||||||| | || |  || ||    
T  23499712 caattacactatctgatacatcttcatatccagttttaggatgtttttctttgaaggcagtcaaactgaatagctgaagagaatcaggcttctctaattc 23499811  T
Q  366 cttaacctcatatat 380  Q
    |||||||||||||||    
T  23499812 cttaacctcatatat 23499826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 172 - 380
Target Start/End: Original strand, 23463836 - 23464045
Alignment:
Q  172 gagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatt 271  Q
    ||||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| ||||||||||||||    
T  23463836 gagctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatt 23463935  T
Q  272 acactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaa 370  Q
    |||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| || ||||    
T  23463936 acactttccgatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattcattaa 23464035  T
Q  371 cctcatatat 380  Q
     |||||||||    
T  23464036 actcatatat 23464045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 167 - 380
Target Start/End: Original strand, 23405200 - 23405414
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||| ||||||||||||||||| ||| ||| ||   |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||    
T  23405200 ttttcgagctttttcaattcatcttcccatactattttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaatagg 23405299  T
Q  267 caattacactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| ||    
T  23405300 caattacactttcagatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattc 23405399  T
Q  366 cttaacctcatatat 380  Q
     |||| |||||||||    
T  23405400 attaaactcatatat 23405414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 23386832 - 23387040
Alignment:
Q  173 agctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatta 272  Q
    |||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||||||||    
T  23386832 agctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatta 23386931  T
Q  273 cactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaac 371  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||||| ||    
T  23386932 cactttctgatatatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattccttgac 23387031  T
Q  372 ctcatatat 380  Q
     ||||||||    
T  23387032 ttcatatat 23387040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 436 - 520
Target Start/End: Original strand, 23401804 - 23401888
Alignment:
Q  436 tttagcataagatcttctatttgttctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaattcttctcac 520  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23401804 tttagcataagatcttttatttgctctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaatccttctcac 23401888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 347
Target Start/End: Original strand, 23398488 - 23398670
Alignment:
Q  166 attttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatag 265  Q
    |||||||||||||| |||||| ||||| |||| ||| ||||  |||||||| ||||| ||| |||||||||||| ||||||| | || | ||| ||||||    
T  23398488 attttggagcttttccaattctttttcccatgtttctttgccccttgaacttggatttgcagctaaaacttttaaagccagagggtttcatttacaatag 23398587  T
Q  266 gcaattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagaga 347  Q
    ||||||| ||||| ||||||||| | ||||||| |||||||||||||||||| ||||  ||  ||||| ||||| ||||||||    
T  23398588 gcaattagactttgtgatagatctttatatccaattttaggatgtttttctctgaaggaaggaaaactgaatagctgaagaga 23398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23351250 - 23351398
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||| |||||||||||||||||||| | ||||| | |||||||||||||||||||||  || | | || ||| ||| ||||| ||||||||||| |||    
T  23351250 aagttttctattacgccaaatcgatgaggacaattcacgtatagcagtgccatgtaaggttaactttgtcatttcctccgatgtcactgaaaattcgatg 23351349  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||||||||||| | |||   ||||| || ||||||||||||||||    
T  23351350 agagatgaacagccaccgagtttaagtttacaaagagattttgaatgaa 23351398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 385 - 473
Target Start/End: Original strand, 23440711 - 23440799
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctct 473  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23440711 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttctct 23440799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 380
Target Start/End: Complemental strand, 35768919 - 35768708
Alignment:
Q  170 tggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaa 269  Q
    ||||| |||| |||||||||||  |||||||| || ||||||||||   ||   ||||| |||||||||| ||||| | |||||||||||||||||||||    
T  35768919 tggagtttttccaattcatttttccatgcttctttacttcttgaacgaagacgtgcacccaaaacttttaaagccaaaggattgcctttgcaataggcaa 35768820  T
Q  270 ttacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatcctt 368  Q
    | ||||||||||| || || ||||||||| |||||||||| ||||||  ||| ||||||||||  || || |||||||| |  || || ||||| |||||    
T  35768819 taacactttctgagagctcttcatatccacttttaggatgcttttctttgaatacagtcaaacagaaaagctgaagagagttgtgcttattcaattcctt 35768720  T
Q  369 aacctcatatat 380  Q
     ||||| |||||    
T  35768719 gacctcgtatat 35768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23448090 - 23448176
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 471  Q
    |||||||| |||||||||||||||||||||||  || | || |||||||||||||| ||||||||||||||||||||||||||||||    
T  23448090 ttatctctagttgtaataatgaccctactacctggtcctagaccatcaatttttaggataagatcttctatttgttctaaggtttct 23448176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23473240 - 23473326
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 471  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  23473240 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttct 23473326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 383 - 470
Target Start/End: Original strand, 23352735 - 23352822
Alignment:
Q  383 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 470  Q
    |||||||||| |||||||||||||||||||||||| || |||   ||||||||||||| ||||||||||||||||| |||||||||||    
T  23352735 gtttatctctagttgtaataatgaccctactacccggtcccaacgcatcaatttttaggataagatcttctatttgctctaaggtttc 23352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23499858 - 23499944
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 471  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | ||||||||||||||||| ||||||||||||    
T  23499858 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcttctatttgctctaaggtttct 23499944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 23468182 - 23468307
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||||| |||||||||||||||| |||  |||| | |||||||||||||||||||||| || | | || ||| ||||||||| || |||||||| |||    
T  23468182 aagtttgcaattacgccaaatcgataaagataattcacgtatagcagtgccatgtaaggataactctgtcatttcctctgatgtcaccgaaaattccatg 23468281  T
Q  117 agagatgaacagccatcaagtaagag 142  Q
    || |||||||| ||||||| ||||||    
T  23468282 agggatgaacaaccatcaactaagag 23468307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 385 - 520
Target Start/End: Original strand, 23387072 - 23387205
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 484  Q
    |||||||| |||||||||||||||||||||||   | |||  |||||||| ||||| ||||||||||||||||  |||||||  | || ||||||||||     
T  23387072 ttatctctagttgtaataatgaccctactacctgctcccaacccatcaatatttaggataagatcttctattttctctaagg--tgtccacactatccaa 23387169  T
Q  485 cacaatgaaagattctttacgtgcaattcttctcac 520  Q
    ||||||||||  || |||||||||||| ||||||||    
T  23387170 cacaatgaaaacttttttacgtgcaatccttctcac 23387205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23462578 - 23462726
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||| ||||| ||||||||||||||| ||||| |||||||| |||| || ||||||| || | | || ||| ||| ||||| |||||||||||  ||    
T  23462578 aagtttggtattatgccaaatcgatgaagtcaattcatgtatagaagtgtcacgtaaggataattttgtcatttcctccgatgtcactgaaaattctgtg 23462677  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||||||| ||||  ||||||||||  |  ||||||||||||||||    
T  23462678 agagatgaacaaccattgagtaagagttgacgaagagattttgaatgaa 23462726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23477853 - 23478001
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||| |||||||||||||||||||||| ||||| | ||||||||||||||  ||||| ||| | | || |||  || ||||| |||||||||||  ||    
T  23477853 aagttttctattacgccaaatcgatgaagacaattcacgtatagcagtgccacctaaggtcaactctgtcatttcatccgatgtcactgaaaattctgtg 23477952  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    |||||  |||| ||||||||||||||||  |  ||||||||||||||||    
T  23477953 agagaataacaaccatcaagtaagagttcacgaagagattttgaatgaa 23478001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23498302 - 23498450
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||| || ||||||||||||||||||| ||||| | ||||||||||||||| ||||| ||| | | || |||  || ||||| ||||| |||||  ||    
T  23498302 aagttttctgttacgccaaatcgatgaagacaattcacgtatagcagtgccatctaaggtcaactctgtcatttcatccgatgtcactgagaattctgtg 23498401  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||| ||||| ||||| ||||||||||  || ||||||||||||||||    
T  23498402 agagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaa 23498450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 23479379 - 23479465
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 471  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | |||||||| |||||||| ||||||||||||    
T  23479379 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcatctatttgctctaaggtttct 23479465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 23471691 - 23471808
Alignment:
Q  20 tttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatgaga 119  Q
    |||| ||||||||||||| ||||||| ||||| ||||||| ||||||||  |||||| || | | || ||| ||| ||||| ||||||||||| ||||||    
T  23471691 tttggtattacgccaaattgatgaagacaattgatgtatatcagtgccacataaggataactctgtcatttcctccgatgtcactgaaaattccatgaga 23471790  T
Q  120 gatgaacagccatcaagt 137  Q
    |||||||| |||||||||    
T  23471791 gatgaacaaccatcaagt 23471808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23403959 - 23404107
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||| ||||| ||||||||||||||| ||||| |||||||| |||| ||  |||||| || | | || ||| ||| ||||| | |||||||||  ||    
T  23403959 aagtttggtattatgccaaatcgatgaagtcaattcatgtatagaagtgtcacataaggataattttgtcatttcctccgatgtcattgaaaattctgtg 23404058  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||||||| ||||  ||||||||||  || ||||||||||||||||    
T  23404059 agagatgaacaaccattgagtaagagttgacaaagagattttgaatgaa 23404107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23446553 - 23446701
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||| || ||||||||||||||||||| ||||| | ||||||||||||||  ||||| ||| | | || |||  |||||||| || ||||||||  ||    
T  23446553 aagttttctgttacgccaaatcgatgaagacaattcacgtatagcagtgccacctaaggtcaactctgtcatttcatctgatgtcaccgaaaattctgtg 23446652  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||| ||| ||||| ||||||||||  |  ||||||||||||||||    
T  23446653 agagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaa 23446701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 23454855 - 23454940
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 470  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||||| |||| ||||||||||   |||||||||||    
T  23454855 ttatctctagttgtaataatgaccctactaccgggtcccagcccatcaatttttaggataaaatcttctattctctctaaggtttc 23454940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23439152 - 23439300
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||| ||||||||||||||||||||| ||| | | |||||||||||||| ||||| | || | | |  ||| |||  |||| || ||||||||  ||    
T  23439152 aagtttggtattacgccaaatcgatgaagacaactcacgtatagcagtgccacgtaagaataactctgtaatttcctccaatgtaaccgaaaattctgtg 23439251  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||||||| ||||| ||||||||||  |  ||||||||||||||||    
T  23439252 agagatgaacaaccatccagtaagagttcacgaagagattttgaatgaa 23439300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 23453329 - 23453477
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    |||||||||||| |||||||||||||||| ||||| | |||||||||||||   ||||| ||| | | || ||| ||| ||||| ||  |||||||  ||    
T  23453329 aagtttgctattgcgccaaatcgatgaagacaattcacgtatagcagtgccgcctaaggtcaactctgtcatttcctccgatgtcaccaaaaattctgtg 23453428  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    |||| |||||| ||||| ||||||||||  |  ||||||||||||||||    
T  23453429 agagttgaacaaccatcgagtaagagttcacgaagagattttgaatgaa 23453477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 23405446 - 23405531
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 470  Q
    |||||||| |||||||| ||||||||||||||| || |||  ||||||||| || | ||||||||||||||||  |||||||||||    
T  23405446 ttatctctagttgtaatgatgaccctactacccggtcccaccccatcaattatttggataagatcttctattttctctaaggtttc 23405531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 36003087 - 36003206
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||| |||||||| ||||||| |||| |||||||| |||||| ||| ||    ||| |||||||||||||||| ||||||  ||||||||  |||||||     
T  36003087 tttttgagcttttccaattcactttcccatgcttctttgctttttgtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagc 36003186  T
Q  267 caattacactttctgataga 286  Q
    ||||| | |||| |||||||    
T  36003187 caattgctctttttgataga 36003206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 23464077 - 23464159
Alignment:
Q  385 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggt 467  Q
    |||||||| ||||||||||||||||||||||||| | |||  |||| |||| |||| |||||||| |||| ||  ||||||||    
T  23464077 ttatctctagttgtaataatgaccctactacccaatcccaacccataaattattaggataagatcatctaattaatctaaggt 23464159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 23382815 - 23382930
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||| |||||| ||||| |||||||| ||||| | ||||||||||||||| |||| | || | | || |||  || ||||| || ||||||||  ||    
T  23382815 aagtttggtattacaccaaaacgatgaagacaattcacgtatagcagtgccatctaagaataactctgtcatttcttccgatgtcaccgaaaattctgtg 23382914  T
Q  117 agagatgaacagccat 132  Q
    ||||||||||| ||||    
T  23382915 agagatgaacaaccat 23382930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 381
Target Start/End: Original strand, 11995 - 12210
Alignment:
Q  167 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 266  Q
    |||| ||||||||||||||||||||| ||||| || |||| ||||||||   |||| || |||| |||||||| ||| ||| ||||||||||||||||||    
T  11995 tttttgagctttttcaattcattttcccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaatagg 12094  T
Q  267 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 365  Q
     ||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||    
T  12095 aaattacactttctgatagatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattc 12194  T
Q  366 cttaacctcatatatg 381  Q
    ||| || |||||||||    
T  12195 cttgacttcatatatg 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 519
Target Start/End: Original strand, 12239 - 12373
Alignment:
Q  383 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatcc 482  Q
    |||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| ||||||||| ||||||| | || ||||  || || | ||||    
T  12239 gtttatctctagttgtaataatgaccctactacccggtcccagcccttcaatttttaggataagatctgctatttgatgtatggtt--tccacgccatcc 12336  T
Q  483 agcacaatgaaagattctttacgtgcaattcttctca 519  Q
    | ||||||||||  ||  ||||||||||| |||||||    
T  12337 aacacaatgaaaactttcttacgtgcaatccttctca 12373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 10723 - 10871
Alignment:
Q  17 aagtttgctattacgccaaatcgatgaaggcaatttatgtatagcagtgccatgtaaggacaaatgtatcgttttctctgatgttactgaaaattcaatg 116  Q
    ||||||| |||||| ||||| |||||||| ||||| | ||||||||||||||| |||| | || | | || |||  || ||||| || ||||||||  ||    
T  10723 aagtttggtattacaccaaaacgatgaagacaattcacgtatagcagtgccatctaagaataactctgtcatttcttccgatgtcaccgaaaattctgtg 10822  T
Q  117 agagatgaacagccatcaagtaagagtttccagagagattttgaatgaa 165  Q
    ||||||||||| ||||  ||||| |||   | |||||||||||||||||    
T  10823 agagatgaacaaccattgagtaaaagtacacggagagattttgaatgaa 10871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 316
Target Start/End: Complemental strand, 12896412 - 12896270
Alignment:
Q  175 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 274  Q
    ||||| ||||||| || | |||||||| |||||| ||| ||    ||| |||||||||||||| | ||||||  |||||||| | |||||| ||||| ||    
T  12896412 cttttccaattcacttgcccatgcttctttgctttttgtacgaaaatttgcacctaaaactttcaaagccaggggattgcctctacaatagccaattgca 12896313  T
Q  275 ctttctgatagat-ctcatatccagttttaggatgtttttctc 316  Q
    || | |||||||| ||||||||||  |||||||||||||||||    
T  12896312 ctctttgatagatcctcatatccatctttaggatgtttttctc 12896270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 16122319 - 16122422
Alignment:
Q  175 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 274  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||   ||||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16122319 cttttccaattcactttcccatgcttctttgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16122418  T
Q  275 cttt 278  Q
    ||||    
T  16122419 cttt 16122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 16336881 - 16336778
Alignment:
Q  175 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 274  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||    |||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16336881 cttttccaattcactttcacatgcttctttgctttttgcacgaaaattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16336782  T
Q  275 cttt 278  Q
    ||||    
T  16336781 cttt 16336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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