View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17813_low_8 (Length: 514)
Name: NF17813_low_8
Description: NF17813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17813_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Complemental strand, 44689910 - 44689426
Alignment:
| Q |
13 |
attatactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44689910 |
attacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcaaaaaaat |
44689811 |
T |
|
| Q |
113 |
tagcatacttgtataatcatgttttttgtttggtacaaaatgacctgcattattggctattcattctttcaataaaaatttgttgctatgactaagtaaa |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44689810 |
tagcatacttgtataatcatcttttttgtttggtacaaaatgacctgcattattggctattcattctttcagtaaaaatttgttgctatgactaagtaaa |
44689711 |
T |
|
| Q |
213 |
agatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttgtcaatgcccgaatgtggcgggacaagaatagtgttaccctta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689710 |
agatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttgtcaatgcccgaatgtggcgggacaagaatagtgttaccctta |
44689611 |
T |
|
| Q |
313 |
aatggaagagttacattgagaataccataattttgaaaaatctaaatcaacattgcttggaaagtttctgttaaggatctagaagtggag-nnnnnnngg |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44689610 |
aatg---gagttacattgagaataccataattttgaaaaatctaaatcaacattgcttggaaagtttctgttaaggatctagaagtggagttttttttgg |
44689514 |
T |
|
| Q |
412 |
agtagcttttaatt-nnnnnnnnnnnnnngtgatcatactattaaagataagaaagcaacaa-tgtaacaaagtaaatatgaacaaaa |
497 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44689513 |
agtagcttttaattaaaaaaaaaaaaaaagtgatcatactattaaagataagaaagcaacaactgtaacaaagtaaatatgaacaaaa |
44689426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 44680645 - 44680390
Alignment:
| Q |
13 |
attatactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnt |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||||||||| | |
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| T |
44680645 |
attacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactcaaaaa--t |
44680548 |
T |
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| Q |
113 |
tagcatacttgtataatcatgttttttgtttggtacaaaatgac---ctgcattattggctattcattctttcaataaaaatttgttgctatgactaagt |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||| ||||| |||||||| |
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| T |
44680547 |
aagcatacttgtataatcaagttttttgtttggtacaaaatgattttctgcattattggctcctcattcttt-aagcaaaattt--tgctaggactaagt |
44680451 |
T |
|
| Q |
210 |
aaaagatgttggtttaatacaattggttttgtagcttttgcgatagaactgacagcttttg |
270 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
44680450 |
aaaagatgttggtttaacacaattggttttgtagcttttgcaatagaaccaacagcttttg |
44680390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 41983667 - 41983801
Alignment:
| Q |
18 |
actgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnttagca |
117 |
Q |
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||||| ||||||| ||||||||||||||| ||||||||| | ||| || |||||| ||| |||| ||||| |||| ||| ||||| || ||| |
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| T |
41983667 |
actgttggggaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctcgtgag--gtatgtgtttaact--taaaaatttgca |
41983762 |
T |
|
| Q |
118 |
tacttgtataatcatgttttttgtttggtacaaaatgac |
156 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
41983763 |
tacttgtataatcaagttttttgtttggtacaaaatgac |
41983801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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