View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_high_10 (Length: 494)
Name: NF17814_high_10
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 337 - 491
Target Start/End: Complemental strand, 41634698 - 41634539
Alignment:
| Q |
337 |
tgtaaccctagaaaggtggtattaaatttgggtattgcataggcacagagtcctaacagtaaacacgcgcctcttcatcttgttgctgccaacctcagtc |
436 |
Q |
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| T |
41634698 |
tgtaaccctagaaaggtggtattaaatttgggtattgcataggcacagagtcctaacagtaaacacgcgcctcttcatcttgttgctgccaacctcactc |
41634599 |
T |
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| Q |
437 |
cnnnnnnnccttcaccg-----ttctcttctcttctctgtcggtatctttcatctctctc |
491 |
Q |
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| T |
41634598 |
ctttttttccttcaccgttctcttctcttctcttctctgtcggtatctttcatctctctc |
41634539 |
T |
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Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 41635019 - 41634882
Alignment:
| Q |
17 |
aacatcttatttttattacagcatctgtatacatacacattttctatgtccatcttgtaccgataacaaataaaaaatcttatcccaaaacgataaccct |
116 |
Q |
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| T |
41635019 |
aacatcttatttttgttacaacatctatatacatacacattttctatatacatcttgtaccgataacaaataaaaaatcttatctcaaaacgataaccct |
41634920 |
T |
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| Q |
117 |
ttaatgttaagtagc-atgtataagttttaccaattaa |
153 |
Q |
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| T |
41634919 |
tcggtgttaagtaacgatatataagttttaccaattaa |
41634882 |
T |
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