View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_high_17 (Length: 392)
Name: NF17814_high_17
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_high_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 16578996 - 16578615
Alignment:
| Q |
11 |
caaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaagtacactgttagtccggttgcgcctggaggagcaggtcccggtagaaaa |
110 |
Q |
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| T |
16578996 |
caaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaagtacactgtgagtccggttgcgcctggaggagcaggtcctggtagaaaa |
16578897 |
T |
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| Q |
111 |
gctccggttaacgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgctggttgtctaagggtaacatttgcaactgatccactac |
210 |
Q |
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| T |
16578896 |
gctccggttaatgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaacatttgcaactgatccactac |
16578797 |
T |
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| Q |
211 |
cgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcag |
310 |
Q |
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| T |
16578796 |
cgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcag |
16578697 |
T |
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| Q |
311 |
tgaatttggactgtctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcgg |
392 |
Q |
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| T |
16578696 |
tgaatttggactgtctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcgg |
16578615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 32802905 - 32803280
Alignment:
| Q |
17 |
tccaacaacacttccaccaacaacttgcccttgtccaccggctaagtacactgttagtccggttgcgcctggaggagcaggtcccggtagaaaagctccg |
116 |
Q |
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| T |
32802905 |
tccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaacctggtggagcaggaccaggtagaaatgtcccg |
32803004 |
T |
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| Q |
117 |
gttaacgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgctggttgtctaagggtaacatttgcaactgatccactaccgctta |
216 |
Q |
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| T |
32803005 |
gttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagctacagagccacttccactga |
32803104 |
T |
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| Q |
217 |
gaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatacttccatcacatggcttttcagtgaatt |
316 |
Q |
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| T |
32803105 |
gaacacaaacaccgcgttgacgcctccttgcgaattgtgctacactttctgctatatcagctccaccggctacctccatgacatggctcttcaaagcatt |
32803204 |
T |
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| Q |
317 |
tggactgtctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttcgg |
392 |
Q |
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| T |
32803205 |
tgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttcgg |
32803280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 35465529 - 35465572
Alignment:
| Q |
324 |
tctcttgttacgaagattggtggttttggtttgttttttgaacc |
367 |
Q |
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| T |
35465529 |
tctcttgttatgaatattggtggttttggtttgttttttgaacc |
35465572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 13212844 - 13212892
Alignment:
| Q |
342 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
390 |
Q |
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| T |
13212844 |
ggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
342 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
390 |
Q |
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| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3332062 - 3332105
Alignment:
| Q |
18 |
ccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
61 |
Q |
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| T |
3332062 |
ccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
3332105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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