View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17814_high_26 (Length: 279)

Name: NF17814_high_26
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17814_high_26
NF17814_high_26
[»] chr3 (12 HSPs)
chr3 (1-189)||(1718132-1718321)
chr3 (193-269)||(1718293-1718369)
chr3 (150-221)||(34296529-34296600)
chr3 (153-220)||(34296498-34296565)
chr3 (153-269)||(9662348-9662465)
chr3 (149-221)||(36033637-36033709)
chr3 (154-183)||(26127093-26127122)
chr3 (153-210)||(36033673-36033730)
chr3 (149-222)||(38233552-38233625)
chr3 (186-222)||(3821001-3821037)
chr3 (154-222)||(22416421-22416489)
chr3 (178-222)||(25310183-25310227)
[»] chr2 (8 HSPs)
chr2 (160-262)||(2123468-2123571)
chr2 (161-262)||(13645910-13646011)
chr2 (161-222)||(36199539-36199600)
chr2 (154-222)||(2190620-2190688)
chr2 (149-221)||(13645983-13646055)
chr2 (154-220)||(331800-331866)
chr2 (160-222)||(33199546-33199608)
chr2 (149-189)||(2123489-2123529)
[»] chr5 (4 HSPs)
chr5 (153-261)||(24025138-24025247)
chr5 (149-221)||(24025102-24025174)
chr5 (177-222)||(24025098-24025143)
chr5 (162-222)||(36954520-36954580)
[»] chr7 (13 HSPs)
chr7 (153-221)||(47113201-47113269)
chr7 (161-262)||(43516989-43517091)
chr7 (137-221)||(39296571-39296656)
chr7 (161-270)||(22589293-22589403)
chr7 (155-221)||(47113171-47113237)
chr7 (161-222)||(21801337-21801397)
chr7 (135-189)||(22589235-22589290)
chr7 (159-222)||(23373540-23373602)
chr7 (154-217)||(23461175-23461238)
chr7 (154-207)||(23473077-23473130)
chr7 (154-219)||(24464663-24464728)
chr7 (149-222)||(31493993-31494065)
chr7 (186-222)||(14196973-14197009)
[»] chr8 (4 HSPs)
chr8 (153-269)||(2053263-2053380)
chr8 (162-216)||(22845721-22845775)
chr8 (154-222)||(18881652-18881720)
chr8 (149-221)||(39910220-39910292)
[»] chr1 (7 HSPs)
chr1 (161-222)||(28552466-28552527)
chr1 (161-222)||(36486344-36486405)
chr1 (161-222)||(6285325-6285386)
chr1 (149-221)||(6285358-6285430)
chr1 (160-204)||(39386532-39386576)
chr1 (154-221)||(10341148-10341215)
chr1 (149-221)||(34500403-34500475)
[»] chr4 (8 HSPs)
chr4 (171-222)||(14857435-14857486)
chr4 (153-222)||(16291830-16291899)
chr4 (153-222)||(43336089-43336157)
chr4 (149-221)||(16291863-16291935)
chr4 (153-217)||(53097305-53097369)
chr4 (154-219)||(51291321-51291386)
chr4 (153-222)||(55264991-55265059)
chr4 (161-221)||(43336121-43336181)
[»] scaffold1875 (1 HSPs)
scaffold1875 (154-222)||(905-973)
[»] scaffold1202 (1 HSPs)
scaffold1202 (149-222)||(1923-1995)
[»] chr6 (2 HSPs)
chr6 (153-222)||(34192228-34192297)
chr6 (154-222)||(29365378-29365446)
[»] scaffold0019 (1 HSPs)
scaffold0019 (149-221)||(35862-35934)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1718132 - 1718321
Alignment:
Q  1 cataattcaaatccgctctgtgactactgtagtaaaatatcatttatgtatttaaaataataataataatagaccacagtgcacttttccctctaaa-tt 99  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||    
T  1718132 cataattaaaatccgctcggtgactactgtagtaaaatatcatttatgtatttaaaataataataataatagactacagtgcactttttcctctaaattt 1718231  T
Q  100 taaaatgttgcgattttgatcccttttnnnnnnnntgaaaattttgtcactatctttagggaaatatgttattttgaccctctatcttta 189  Q
    |||||||||||||||||||||||||||        |||||||||||||||||| || ||| ||||| | | |||||||| | ||||||||    
T  1718232 taaaatgttgcgattttgatcccttttaaaaaaaatgaaaattttgtcactattttcaggaaaataagctcttttgaccatttatcttta 1718321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 1718293 - 1718369
Alignment:
Q  193 aaataagctcttttgaccctttatctttaccggagttgcaattttgaccttctgttttgggacacgtggcattttct 269  Q
    |||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||    
T  1718293 aaataagctcttttgaccatttatctttaccagagttgcaattttggcctcctgttttgggacacgtggcgttttct 1718369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 34296600 - 34296529
Alignment:
Q  150 tatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||||||||||||||||| | ||||||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  34296600 tatctttagggaaatatgctcttttgaccctctaactttatggaaatatgctcttttgaccctttatcttta 34296529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 34296565 - 34296498
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttt 220  Q
    ||||| ||||||||| | |||||||||| |||||||||| ||||||||||| || || ||||||||||    
T  34296565 ctttatggaaatatgctcttttgaccctttatctttagggaaataagctctcttaactctttatcttt 34296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 9662465 - 9662348
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac-cggagttgcaattttgaccttctgttttg 251  Q
    ||||| ||||||||| |  ||| |||||||||  ||||| |||||| |||||||||||| ||||||||||    ||||||||  ||| ||| |||||||     
T  9662465 ctttatggaaatatgatcgtttaaccctctataattagggaaataatctcttttgaccccttatctttacaaaaagttgcaacattggcctcctgtttta 9662366  T
Q  252 ggacacgtggcattttct 269  Q
    ||||||||||||| ||||    
T  9662365 ggacacgtggcatcttct 9662348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 36033637 - 36033709
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||| ||||| |||||||||| ||||||||||||| ||||| | ||||| |||||| | ||||| ||||||||    
T  36033637 ctatttttagagaaatatgttcttttgaccctctaactttatggaaatatgctcttctaaccctctatcttta 36033709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 26127122 - 26127093
Alignment:
Q  154 tttagggaaatatgttattttgaccctcta 183  Q
    ||||||||||||||||||||||||||||||    
T  26127122 tttagggaaatatgttattttgaccctcta 26127093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 36033673 - 36033730
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgacc 210  Q
    ||||| ||||||||| | || | |||||||||||||| | ||||||||||||||||||    
T  36033673 ctttatggaaatatgctcttctaaccctctatctttaaggaaataagctcttttgacc 36033730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 38233552 - 38233625
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||||  |||||||||| || | ||||| ||| |||||| ||||| ||||||||| || |||||||||||    
T  38233552 ctatctttaaagaaatatgttcttataaccctttatttttaggaaaatatgctcttttgtccttttatctttac 38233625  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 3821001 - 3821037
Alignment:
Q  186 tttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  3821001 tttagggaaatatgctcttttgaccctttatctttac 3821037  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 22416421 - 22416489
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||| ||||| | |||||||| |||| | | ||| ||||| ||||||||||||| ||||||||||    
T  22416421 tttagggatatatgctcttttgaccttctaacataaggtaaatatgctcttttgacccattatctttac 22416489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 25310183 - 25310227
Alignment:
Q  178 cctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||||||||| ||||||||| ||||| || |||||||||||    
T  25310183 cctctatctttagggaaataagctattttggccatttatctttac 25310227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 2123468 - 2123571
Alignment:
Q  160 gaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac-cggagttgcaattttgaccttctgttttgggacacg 258  Q
    |||||||| | |||||| |||||||||||||| ||||||| ||||||||||||||||||||||    |||||||||||||||   ||||||||||||| |    
T  2123468 gaaatatgctcttttgatcctctatctttagggaaataagttcttttgaccctttatctttacaaaaagttgcaattttgacaccctgttttgggacatg 2123567  T
Q  259 tggc 262  Q
    ||||    
T  2123568 tggc 2123571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 13646011 - 13645910
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttaccggagttgcaattttgaccttctgttttgggacacgtg 260  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||||||| ||  ||| | |||||||||||    
T  13646011 aaatatgctcttttaaccctctatctttaggaaaataagctcttttgaacctctatctttacaaaagttgcaattttggccccctgatgtgggacacgtg 13645912  T
Q  261 gc 262  Q
    ||    
T  13645911 gc 13645910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 36199539 - 36199600
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||| | ||||||| ||||||||||||| ||||||||  |||| |||||||||||||||    
T  36199539 aaatatgcttttttgacactctatctttaggaaaataagcaattttaaccctttatctttac 36199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 2190620 - 2190688
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||||||||| | ||||||||||||| ||| ||| ||||| |||| |||| ||| ||||||||||    
T  2190620 tttagggaaatatgctcttttgaccctctaacttaaggaaaatatgctcgtttggccccttatctttac 2190688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 13646055 - 13645983
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||||| ||||||||| | ||||||||||||| || || | ||||| |||||||| ||||| ||||||||    
T  13646055 ctatctttacggaaatatgctgttttgaccctctaactgtatgtaaatatgctcttttaaccctctatcttta 13645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 331800 - 331866
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttt 220  Q
    |||||||||||||| | ||||||||||||| ||| ||| ||||| ||| |||||| || ||||||||    
T  331800 tttagggaaatatgctcttttgaccctctaacttaagggaaatatgcttttttgatccattatcttt 331866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 33199546 - 33199608
Alignment:
Q  160 gaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||| | |||||||| |||| ||||||| ||||| ||||||||| || |||||||||||    
T  33199546 gaaatatgctcttttgaccttctaactttagggaaatatgctcttttggccttttatctttac 33199608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 2123489 - 2123529
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatcttta 189  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  2123489 ctatctttagggaaataagttcttttgaccctttatcttta 2123529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 24025138 - 24025247
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac-cggagttgcaattttgaccttctgttttg 251  Q
    ||||| ||||||||| | |||| || ||||||||||||  ||||||||||||||||||||||||||||||    ||||||||||||| ||| ||||||||    
T  24025138 ctttacggaaatatgctcttttaacactctatctttagagaaataagctcttttgaccctttatctttacaaaaagttgcaattttggcctcctgttttg 24025237  T
Q  252 ggacacgtgg 261  Q
      ||||||||    
T  24025238 caacacgtgg 24025247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 24025102 - 24025174
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||||||||||||||| | ||||||||||||| ||||| | ||||| |||||||| || || ||||||||    
T  24025102 ctatctttagggaaatatgctcttttgaccctctaactttacggaaatatgctcttttaacactctatcttta 24025174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 24025098 - 24025143
Alignment:
Q  177 ccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||    
T  24025098 ccctctatctttagggaaatatgctcttttgaccctctaactttac 24025143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 36954580 - 36954520
Alignment:
Q  162 aatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||| |||| ||||| |||||||| | ||||| |||| ||| |||||||||||||||    
T  36954580 aatatgttcttttaaccctatatctttaaggaaatatgctcattttaccctttatctttac 36954520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 47113201 - 47113269
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||||||||||| | ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  47113201 ctttagggaaatatgctcttttggccctctatctttagggaaataagatcttttggccctttatcttta 47113269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 43517091 - 43516989
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac-cggagttgcaattttgaccttctgttttgggacacgt 259  Q
    ||||||| | |||| |||||||||||||||| |||||| ||||| |||||||||||||||||    |||| ||||||||||   |||||||| |||||||    
T  43517091 aaatatgctcttttaaccctctatctttaggaaaataaactcttctgaccctttatctttacaaaaagtttcaattttgacaccctgttttgagacacgt 43516992  T
Q  260 ggc 262  Q
    |||    
T  43516991 ggc 43516989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 39296571 - 39296656
Alignment:
Q  137 aaaattttgtca-ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||||||||||  ||||||||||||||||||| | ||||||||||||| ||||| | |||||  ||||||| | ||||||||||||    
T  39296571 aaaattttgtcctctatctttagggaaatatgctcttttgaccctctaactttatggaaatatactcttttaatcctttatcttta 39296656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 22589293 - 22589403
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac-cggagttgcaattttgaccttctgttttgggacacgt 259  Q
    ||||||| | |||||  |||||||||| ||| ||||||||||||||||| ||||||||||||    | ||||||||||| || || ||||| ||| ||||    
T  22589293 aaatatgctcttttgttcctctatcttcaggaaaataagctcttttgactctttatctttacaaaaaattgcaattttggccctcagttttaggatacgt 22589392  T
Q  260 ggcattttctt 270  Q
    ||||| |||||    
T  22589393 ggcatcttctt 22589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 47113171 - 47113237
Alignment:
Q  155 ttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||| |||||||| | ||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||    
T  47113171 ttagagaaatatgctcttttgaccctctaactttagggaaatatgctcttttggccctctatcttta 47113237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 21801337 - 21801397
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||||||||||||  | ||| |||||  ||||||||||||||||||||||||||||||    
T  21801337 aaatatgttattttgactatttat-tttagagaaataagctcttttgaccctttatctttac 21801397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 22589235 - 22589290
Alignment:
Q  135 tgaaaattttg-tcactatctttagggaaatatgttattttgaccctctatcttta 189  Q
    ||||||||||| |||||||||||| ||||||||| | ||||||||||||| |||||    
T  22589235 tgaaaattttgctcactatctttaaggaaatatgctcttttgaccctctaacttta 22589290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 23373602 - 23373540
Alignment:
Q  159 ggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||| | |||| || ||| ||||||||| |||||||||||||||||||||||| |||||    
T  23373602 ggaaatatgctcttttaactctccatctttagg-aaataagctcttttgaccctttatatttac 23373540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 23461238 - 23461175
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatc 217  Q
    |||| ||||||||||||||||||||||||| ||| ||  |||||  ||||||||| ||||||||    
T  23461238 tttaaggaaatatgttattttgaccctctaacttaagagaaatattctcttttgatcctttatc 23461175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 23473077 - 23473130
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttg 207  Q
    |||| |||||| |||||||||||||||||| ||| ||| ||||| |||||||||    
T  23473077 tttaaggaaatgtgttattttgaccctctaacttaagggaaatatgctcttttg 23473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 24464663 - 24464728
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctt 219  Q
    |||||||||||||||| ||||||||| ||| | | ||| ||||| | ||||||||||| |||||||    
T  24464663 tttagggaaatatgttcttttgaccccctaacataagggaaatatgatcttttgaccccttatctt 24464728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 31493993 - 31494065
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||| |||||||||||||| | ||||||||||||| | | ||| ||||| ||| ||||||||| ||||||||||    
T  31493993 ctatgtttagggaaatatgctcttttgaccctctaacataaggaaaatatgct-ttttgaccccttatctttac 31494065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 14197009 - 14196973
Alignment:
Q  186 tttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  14197009 tttagggaaatatgctcttttgaccctttatctttac 14196973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 2053263 - 2053380
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta-ccggagttgcaattttgaccttctgttttg 251  Q
    ||||| ||||||||| | |||| |||||||||||||||  ||||||||||||||||||||||| |||||     ||||||||||||  ||  ||||||||    
T  2053263 ctttatggaaatatgctcttttaaccctctatctttagagaaataagctcttttgaccctttacctttataaaaagttgcaattttagccccctgttttg 2053362  T
Q  252 ggacacgtggcattttct 269  Q
    ||| ||||||||| ||||    
T  2053363 ggatacgtggcatcttct 2053380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 22845721 - 22845775
Alignment:
Q  162 aatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttat 216  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||    
T  22845721 aatatgttcttttgaccctctatctttagaaaaataagctcttttgtctctttat 22845775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 18881720 - 18881652
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||||||||| |||||||| | |||| | | ||| ||||| ||||||||||||| ||||||||||    
T  18881720 tttagggaaatatgctattttgagcttctaacataagggaaatacgctcttttgaccccttatctttac 18881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 39910292 - 39910220
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||| ||||||||||||| | |||| |||||||| ||||||  ||||| | |||||||| ||| ||||||||    
T  39910292 ctatcattagggaaatatgctcttttaaccctctaactttagtgaaatatgatcttttgatcctctatcttta 39910220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28552527 - 28552466
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||| | |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  28552527 aaatatgctcttttaaccctctatctttagggaaataagctcttttgacccttaatctttac 28552466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 36486405 - 36486344
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||| || ||||||||||| ||||||||  |||||||| |||||||||||||||||||||    
T  36486405 aaatatatttttttgaccctcgatctttagataaataagcacttttgaccctttatctttac 36486344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 6285386 - 6285325
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||| | |||||||||||||| |||||| | ||||||||| |||||| |||||||||||    
T  6285386 aaatatgctcttttgaccctctatatttagggatataagctctattgaccatttatctttac 6285325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 6285430 - 6285358
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||||||  ||||||| | ||||||||||||| ||||| | ||||| |||||||||||||| ||| ||||    
T  6285430 ctatctttagaaaaatatgctcttttgaccctctaactttatgaaaatatgctcttttgaccctctatattta 6285358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 39386532 - 39386576
Alignment:
Q  160 gaaatatgttattttgaccctctatctttaggcaaataagctctt 204  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||    
T  39386532 gaaatatgatattttgaccctccatctttagacaaataagctctt 39386576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 10341148 - 10341215
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||||||||||||  ||||||| ||||| ||||||||| |||||   |||||||||||||||| ||||    
T  10341148 tttagggaaatatactattttggccctccatctttagggaaatatcatcttttgaccctttatgttta 10341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 34500403 - 34500475
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||| ||||||||||||| | |||| |||||||| ||||||  ||||| | |||||||| ||| ||||||||    
T  34500403 ctatcattagggaaatatgctcttttaaccctctaactttagtgaaatatgatcttttgatcctctatcttta 34500475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 14857435 - 14857486
Alignment:
Q  171 ttttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  14857435 ttttaaccctctatctttagagaaataagctcttttgaccctttatctttac 14857486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 16291899 - 16291830
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||||||||| | ||||  ||||||||||||||| ||||||| ||||||| ||| ||||||||||    
T  16291899 ctttagggaaatatgctcttttagccctctatctttagggaaataagatcttttgtccccttatctttac 16291830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 43336157 - 43336089
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||||||||||| |||||||| |||||||||| | ||||||| |  |||||||||||||||||||    
T  43336157 ctttagggaaatatgttcttttgaccttctatctttatggaaataagat-gtttgaccctttatctttac 43336089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 16291935 - 16291863
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||| ||||||||||| | ||||||||||||| ||||||| ||||| ||||||||  |||| ||||||||    
T  16291935 ctatcttcagggaaatatgctcttttgaccctctaactttagggaaatatgctcttttagccctctatcttta 16291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 53097305 - 53097369
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatc 217  Q
    |||||| |||||||| |||||||  |||||||||||||| ||||||| |||||| ||||||||||    
T  53097305 ctttagcgaaatatgctattttggtcctctatctttaggaaaataagatcttttaaccctttatc 53097369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 51291386 - 51291321
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctt 219  Q
    |||||||||||||||| ||||||||| ||| | | ||| ||||| | ||||||||||| |||||||    
T  51291386 tttagggaaatatgttcttttgaccccctaacataagggaaatatgatcttttgaccccttatctt 51291321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 55264991 - 55265059
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||| ||||||||| |||| ||||| |||||||||| ||||||| | ||| ||| ||||||||||||    
T  55264991 ctttaggaaaatatgttttttt-accctttatctttagggaaataagatatttcgactctttatctttac 55265059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 43336181 - 43336121
Alignment:
Q  161 aaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    ||||||| | ||||||||||||| ||||||| ||||| | |||||||||| | ||||||||    
T  43336181 aaatatgatcttttgaccctctaactttagggaaatatgttcttttgaccttctatcttta 43336121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 973 - 905
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||||||| ||||| |||||||||| |||| | | ||| ||||| ||||||||||||| ||||||||||    
T  973 tttagggatatatgctattttgaccttctaacataaggtaaatatgctcttttgaccccttatctttac 905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 1995 - 1923
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    |||| |||||||||||||| ||||||||||| ||| | | ||| ||||| ||| ||||||||| ||||||||||    
T  1995 ctatgtttagggaaatatgctattttgaccccctaacataagggaaatatgct-ttttgaccccttatctttac 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 34192297 - 34192228
Alignment:
Q  153 ctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||||| ||   |||||| ||||||||||||||| ||||||| | ||||  ||||||||||||||    
T  34192297 ctttagggaaaaatacaattttggccctctatctttaggaaaataagatattttagccctttatctttac 34192228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 29365378 - 29365446
Alignment:
Q  154 tttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatctttac 222  Q
    ||||||||||||   | |||||||||| ||| ||| |  ||||||||||||||| ||||||||||||||    
T  29365378 tttagggaaatacacttttttgaccctttatattttgagaaataagctcttttggccctttatctttac 29365446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 35862 - 35934
Alignment:
Q  149 ctatctttagggaaatatgttattttgaccctctatctttaggcaaataagctcttttgaccctttatcttta 221  Q
    |||||||||| |||||||| | |||||| |||||| ||||| | |||||  ||||||| | ||||||||||||    
T  35862 ctatctttagagaaatatgctcttttgatcctctaactttatggaaatatactcttttaatcctttatcttta 35934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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