View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_high_33 (Length: 227)
Name: NF17814_high_33
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_high_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1965699 - 1965473
Alignment:
| Q |
1 |
gtgtaaatcaattattcaagcaagttacacatccatggtcaaccaatacttaaaagtcattcgaaagtctaagaatgtgtaatgtcaactatcgaaccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1965699 |
gtgtaaatcaattattcaagcaagttacacatccatggtcaaccaatacttaaaagtcattcgaaagtctaagaatgtgtaatgtcaactatcgaaccta |
1965600 |
T |
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| Q |
101 |
gaagctcacagtccttctcgatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaacttgactcatttg |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1965599 |
gaagctcacagtccttcttgatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaactcgactcatttg |
1965500 |
T |
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| Q |
201 |
ttttcctttatttttgtcaaaccaggt |
227 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
1965499 |
ttttcctttatttttgtcaaatcaggt |
1965473 |
T |
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