View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17814_high_8 (Length: 518)
Name: NF17814_high_8
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 34374805 - 34374301
Alignment:
| Q |
1 |
tatatgatcctctggtgctcgtgttattgatacttcctgttaatacaagaaatattatcaatatcttctgaatattatatcaaagactacatgcataacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34374805 |
tatatgatcctctggtgctcgtgttattgatacttcctgttaatacaagaaatattatcaatatcttctgaatattatatcaaagactacatgcataacg |
34374706 |
T |
|
| Q |
101 |
gtgaaaaatacatgtcatgaaattgattattaccttgttaattctcttatttgcgtttcctttatgaaagaatttggacagaaaacgagtacaccctgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34374705 |
gtgaaaaatacatgtcatgaaattgattattaccttgttaattctcttatttgcgtttcctttatgaaagaatttggacagaaaaggagtacaccctgca |
34374606 |
T |
|
| Q |
201 |
ggggggcaagttgacgagcttgagttgtttacttcaatattatcatcttctttattttttgaatgtgtgacattgttgaggctgtcttgatttgcatgga |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34374605 |
ggggggcaagttgacgagtttgagttgtttacttcaatattatcatcttctttattttttgaatgtgtgacattgttgaggctgtcttgatttgcatgga |
34374506 |
T |
|
| Q |
301 |
tatatgttggtgatagagatatcttcaacattggacaataatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaacaaatatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34374505 |
tatatgttggtgatagagatatcttcaacattggacaatcatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaacaaatatt |
34374406 |
T |
|
| Q |
401 |
cacaagctttggaagtccataaagagataaataacatagtttattaaacctaatagttgcggccacatctcctttaatagtatcatcctctttaccatct |
500 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34374405 |
cacaagctttggaagtccagaaagagataaataacatagtttattaaacctaatagttgcggccacatctcctttaatagtatcatcctctttaccatct |
34374306 |
T |
|
| Q |
501 |
ctgct |
505 |
Q |
| |
|
||||| |
|
|
| T |
34374305 |
ctgct |
34374301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 34289864 - 34289946
Alignment:
| Q |
333 |
ggacaataatcaatcttaaattccctcaaggatggatattctaactcaacagaatctgaacaaatattcacaagctttggaag |
415 |
Q |
| |
|
||||||| ||||| | ||||| | ||||||||||| |||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
34289864 |
ggacaatcctcaatatcaaattgcttcaaggatggacattctaaccaaagtgaatctgaacaaatactcacaagctttggaag |
34289946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 358 - 458
Target Start/End: Original strand, 15893900 - 15894000
Alignment:
| Q |
358 |
tcaaggatggatattctaactcaacagaatctgaacaaatattcacaagctttggaagtccataaagagataaataacatagtttattaaacctaatagt |
457 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||| || | |||||| |
|
|
| T |
15893900 |
tcaaggatggatattctaaccaaagtaattctgaacaaatactcacaagctttggaagtcttgaaagtgataaataacaaagtttattgaaaccaatagt |
15893999 |
T |
|
| Q |
458 |
t |
458 |
Q |
| |
|
| |
|
|
| T |
15894000 |
t |
15894000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University