View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_1 (Length: 696)
Name: NF17814_low_1
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 652; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 681
Target Start/End: Original strand, 47582095 - 47582758
Alignment:
| Q |
18 |
acgaaaaggattatgtgggtgacgttgggcgcttcaacaacattctttgggatatgttaaacgatttgagaagggagactggaaatgcttctgcaaaatt |
117 |
Q |
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| T |
47582095 |
acgaaaaggattatgtgggtgacgttgggcgcttcaacaacattctttgggatatgttaaacgatttgagaagggagactggaaatgcttctgcaaaatt |
47582194 |
T |
|
| Q |
118 |
tgctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagt |
217 |
Q |
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| T |
47582195 |
tgctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccatgcctatctgcagagaactgcagctggtgtcttagt |
47582294 |
T |
|
| Q |
218 |
gatgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattcc |
317 |
Q |
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| T |
47582295 |
gatgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattcc |
47582394 |
T |
|
| Q |
318 |
acaaggcagacgacaataattcttgggtgctgcccccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacac |
417 |
Q |
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| T |
47582395 |
acaaggcagacgacaataattcttgggtgctgcctccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacac |
47582494 |
T |
|
| Q |
418 |
ttttttaattttacgaccatttctgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatata |
517 |
Q |
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| T |
47582495 |
ttttttaattttacgaccatttctgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatata |
47582594 |
T |
|
| Q |
518 |
tcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttcatcaatattttatcaatt |
617 |
Q |
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| T |
47582595 |
tcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttcatcaatattttatcaatt |
47582694 |
T |
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| Q |
618 |
aggagagggtgttagcttttcgtgaaaaaagtttctgctaggtgttatgtttctactttctgtg |
681 |
Q |
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| T |
47582695 |
aggagagggtgttagcttttcgtgaaaaaagtttctgctagatgttatgtttctactttctgtg |
47582758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 47572398 - 47572901
Alignment:
| Q |
19 |
cgaaaaggattatgtgggtgacgttgggcgcttcaacaacattctttgggatatgttaaacgatttgagaagggagactggaaatgcttctgcaaaattt |
118 |
Q |
| |
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|||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| | | ||||||||||| |||||| |
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| T |
47572398 |
cgaaaaagattatgtgggtgaagttggacgcttcaacaacattctctgggatatgttgaacgatttgagaaacgaggcagcaaatgcttctggaaaattg |
47572497 |
T |
|
| Q |
119 |
gctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgcttggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagtg |
218 |
Q |
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| T |
47572498 |
gctgataagtcagtgaatatcacagacaaccaaaaactatatggttatgtttggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcg |
47572597 |
T |
|
| Q |
219 |
atgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcacaatattatatcccagttgtggtgttagatttgaattatatccattcca |
318 |
Q |
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| T |
47572598 |
atgccatagcagaaattccaactagttgttgcagaggaaaatctggaggagcaatattttatcccagttgtggtcttaaatttgacttaaatcctttcca |
47572697 |
T |
|
| Q |
319 |
caaggcagacgacaataattcttggg------tgctgcccccacccacaaatcctcgcctttcagctcgaccaggtttaaacttttgattatccctcatt |
412 |
Q |
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||||||| || ||||| | |||||| || || ||||| |||| |||||| |||||||| ||||||||||| ||||||| |||| |||| |
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| T |
47572698 |
caaggcacacaacaatgttgcttgggggccaccgcctccaccaccaacaattcctcgtgcttcagctccaccaggtttaagcttttgaaaatccttcata |
47572797 |
T |
|
| Q |
413 |
tacacttttttaattttacgaccatttctgacataataagacatcaatgta------atcata-ccatatattactgtcaacccatgattactatatcta |
505 |
Q |
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|| | ||| |||||||||| | ||||| ||||| ||||||||| |||| | |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
47572798 |
tatattttcttaattttactaacatttgtgacacaataagacagcaatcaagttaatatcatacccatatattactgtcaacccatgactactatatcta |
47572897 |
T |
|
| Q |
506 |
gcaa |
509 |
Q |
| |
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|||| |
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| T |
47572898 |
gcaa |
47572901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 468 - 611
Target Start/End: Original strand, 47570697 - 47570847
Alignment:
| Q |
468 |
taccatatattactgtcaacccatgattactatatctagcaaaagatatat--cttctgtaagaacttgg------gagaacaagaattgaaatcaccaa |
559 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||| || ||||||| |||||| ||| |||||||||||| |
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| T |
47570697 |
taccatatatcactgtcaacccatggatactatatctagcaagagatatatatcttctgcaataacttggtacattgagaacgtgaactgaaatcaccaa |
47570796 |
T |
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| Q |
560 |
taatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
611 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||| | |||||||||| |
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| T |
47570797 |
taatcttttcctatccctctaatgaaaa-ataaatagttaaacaatatttta |
47570847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 636
Target Start/End: Original strand, 47573217 - 47573269
Alignment:
| Q |
583 |
gaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttt |
636 |
Q |
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| T |
47573217 |
gaaaatataagtagttcatcaatattttaagaactaggagagggt-ttagcttt |
47573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 555 - 611
Target Start/End: Original strand, 47566249 - 47566304
Alignment:
| Q |
555 |
accaataatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
611 |
Q |
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||||||||||||||| | |||||| |||||||| |||| ||||| |||||||||||| |
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| T |
47566249 |
accaataatcttttcttatccctcaaatgaaaa-ataaatagttaatcaatatttta |
47566304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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