View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_10 (Length: 517)
Name: NF17814_low_10
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 116 - 501
Target Start/End: Complemental strand, 30537437 - 30537051
Alignment:
| Q |
116 |
ggtcttaagggacattgaactaattgattattgacaaatatttattccgtgcataaattataagcttcaacaacctcttaatgacttgtttctaggaaaa |
215 |
Q |
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| T |
30537437 |
ggtcttaagggacattgaactaattgattagtgacaaatatttgttccgtgcataaattataagcttcaacaacctcttaatgacttgtttctaggaaaa |
30537338 |
T |
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| Q |
216 |
caacttgataaaattgaagtgtgnnnnnnnttatagttaatatattataattattctcacct-tttattttgaccatattaaaaaactttaattttaact |
314 |
Q |
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| T |
30537337 |
caacttgataaaattgaagtgtgaaaaaaattatagttagtatattataattattcttatttctttattttgaccatattaaaaaactttaattttaact |
30537238 |
T |
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| Q |
315 |
aattaattgatcacaaatatttatccagtacatgaattttataataaatttaaattagcgtattataattactcttatttttattcaaaaaatatcaaac |
414 |
Q |
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| T |
30537237 |
aattaattgatcacaaatatttatcccgtacatgaattttataataaatttaaattagcatattataattattcttatttttattcaaaaaatatcaaac |
30537138 |
T |
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| Q |
415 |
aaatactaaatttaactaattttcctgtgataaacaaatatttgttacttatttggtctacttcgaacctcatcaacaaatgtattt |
501 |
Q |
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| T |
30537137 |
aaatactaaatttaactaattttcctgtgataaacaaatatttgttacttatttgatctacttcgaacctcatgaacaaatgtattt |
30537051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 30537539 - 30537487
Alignment:
| Q |
12 |
attatactcaaattaatatgttatagtattctcatttttatttagaatactat |
64 |
Q |
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| T |
30537539 |
attatactcaaattaatatgttatagtattctcatttttatttagaatactat |
30537487 |
T |
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