View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_15 (Length: 438)
Name: NF17814_low_15
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 38367134 - 38367437
Alignment:
| Q |
48 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
147 |
Q |
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| T |
38367134 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
38367233 |
T |
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| Q |
148 |
cttaaaattgtacttattgtgataattatggtgaaaatgttggacaccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaa |
247 |
Q |
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| T |
38367234 |
cttaaaattgtacttattgtgataattatggtgaaaatgttggaccccaaactgtattgatgttatgtttaatgatatgagatgagtttgcttttgtcaa |
38367333 |
T |
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| Q |
248 |
aaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaacta |
347 |
Q |
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| T |
38367334 |
aaaagtatgtaattgattcataattaaattattaatacatcacatcaaactaagtgccttgaagttacaactattaagctagcacctaatgttaaaacta |
38367433 |
T |
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| Q |
348 |
tata |
351 |
Q |
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|||| |
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| T |
38367434 |
tata |
38367437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 38367684 - 38367757
Alignment:
| Q |
348 |
tataacttacttcaaaatatgcttactgtataacaataaattatggatatgattcatgacgtttgcattagaat |
421 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38367684 |
tataacttacttcaaaatatgcttactatataacaataaattatggatatgattcatgacgtttgcattagaat |
38367757 |
T |
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