View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_18 (Length: 402)
Name: NF17814_low_18
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 24506861 - 24507253
Alignment:
| Q |
1 |
gccattcatattgtttcagaacaaggaaaaatagttttttcatcaaactttcagatcgaattnnnnnnngaaaacaacacaccaagtcgttctcttattg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| |
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| T |
24506861 |
gccattcatattgtttcggaacaaggaaaaatagttttttcatcaaactttcagattgaattaaaaaaagaaaacaacacaccaagtggttctcttattg |
24506960 |
T |
|
| Q |
101 |
tttattcatactttgcaaggaaaatcccacaaatgagggtgaagccaaaccttaataatattaacatgtcactaacagaattttccatnnnnnnngtccc |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24506961 |
tttattcatacgctgcaaggaaaatcccacaaatgagggtgaagccaaaccttaataatattaacatgtcactaacagaattttccataaaaaaagtccc |
24507060 |
T |
|
| Q |
201 |
taacagaatttatttttacatcacatatacacatggtattttttaatggataatgaataaaatactgtgtcatactcagatctagtaagggatagatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24507061 |
taacagaatttatttttacatcacatatacacatggtattttttaatggataatgaataaaatactgtgtcatactcagatctagtaagggatagatttt |
24507160 |
T |
|
| Q |
301 |
ttatattaaaagaagaatataattgatttagtgtcttatctcaactatattgataccctaattactaacaatcatttacagcacaccataata |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24507161 |
ttatattaaaagaagaatataattgatttagtgtcttatctcaactatattgataccctaattactaacaatcatttacagcacaccaaaata |
24507253 |
T |
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