View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17814_low_19 (Length: 394)
Name: NF17814_low_19
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 1965106 - 1965477
Alignment:
| Q |
19 |
gtatgacattaacttctggtgtagatgaaagaaagccaataatgagtagaatactcagtgtgcaacatttttcaggagaacaatatgttgattctggatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965106 |
gtatgacattaacttctggtgtagatgaaagaaagccagtaatgagtagaatactcagtgtgcaacatttttcaggagaacaatatgttgattctggatg |
1965205 |
T |
|
| Q |
119 |
gccattatggttgtcttcagttgcaggagaagctatcaaaggttgggttcctagaagggccgactcttttgaaaaattagaccaagttagttctattatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965206 |
gccattatggttgtcttcagttgcaggagaagctatcaaaggttgggttcctagaagggccgactcttttgaaaaattagaccaagttagttctattatt |
1965305 |
T |
|
| Q |
219 |
tctcttttttgtttcatattgctttacttagtttaaattgatgggtcgtccattgtggactagtacttgaaaattgctcgaaatccaaataatgaccgag |
318 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965306 |
tctcttttttgtttcataatgttttacttagtttaaattgatgggtcgtccattgtggactagtacttgaaaattgctcgaaatccaaataatgaccgag |
1965405 |
T |
|
| Q |
319 |
atcgccttctagaagtataagctcatggttcttttcggccttgagcttgagacggtgacttgatcgaacctg |
390 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1965406 |
atcgtcttctagaagtataagctcatggttcttttcggccttgagcttgagatggtgacttgatcgaacctg |
1965477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University