View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17814_low_2 (Length: 679)

Name: NF17814_low_2
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17814_low_2
NF17814_low_2
[»] chr8 (2 HSPs)
chr8 (10-663)||(23560021-23560676)
chr8 (551-612)||(23555593-23555654)
[»] chr3 (7 HSPs)
chr3 (490-644)||(1107494-1107648)
chr3 (530-651)||(1077256-1077377)
chr3 (530-633)||(1050371-1050474)
chr3 (530-633)||(1091114-1091217)
chr3 (575-630)||(13855062-13855117)
chr3 (523-612)||(5524631-5524720)
chr3 (523-591)||(5855300-5855368)
[»] chr4 (20 HSPs)
chr4 (481-591)||(31708195-31708305)
chr4 (491-661)||(31724791-31724961)
chr4 (491-661)||(31702236-31702406)
chr4 (491-661)||(31717566-31717736)
chr4 (480-647)||(31732977-31733144)
chr4 (480-647)||(31745878-31746045)
chr4 (422-591)||(31697104-31697273)
chr4 (239-347)||(31733277-31733385)
chr4 (480-591)||(31740591-31740701)
chr4 (522-646)||(36366358-36366482)
chr4 (247-348)||(31702567-31702668)
chr4 (247-348)||(31717897-31717998)
chr4 (247-348)||(31725122-31725223)
chr4 (472-621)||(36435759-36435908)
chr4 (239-347)||(31740833-31740941)
chr4 (551-621)||(36376261-36376331)
chr4 (551-621)||(36429306-36429376)
chr4 (274-347)||(36366667-36366740)
chr4 (472-621)||(36399694-36399843)
chr4 (239-347)||(31746178-31746286)
[»] chr2 (5 HSPs)
chr2 (476-603)||(2707321-2707448)
chr2 (473-602)||(2682025-2682154)
chr2 (545-621)||(34218953-34219029)
chr2 (476-594)||(2717091-2717209)
chr2 (532-620)||(34192609-34192697)
[»] chr7 (1 HSPs)
chr7 (472-525)||(20231547-20231600)
[»] chr5 (1 HSPs)
chr5 (573-610)||(22689435-22689472)
[»] chr1 (1 HSPs)
chr1 (479-515)||(47584368-47584404)


Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 10 - 663
Target Start/End: Original strand, 23560021 - 23560676
Alignment:
Q  10 gactgatatgaatgcaacgcaatgcctctgattcaacacaagcgtcttttatgtttttgtcgattagttctaaagccctgccctctttccataaactcca 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23560021 gactgacatgaatgcaacgcaatgcctctgattcaacacaagcgtcttttatgtttttgtcgattagttctaaagcccttccctctttccataaactcca 23560120  T
Q  110 tgcctaaagtgaaccatggaaatcgaaattagaaaattgttaaaacttacaagtactaacatgtat--cacatcaaatacttacatgagtgacaagatta 207  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||| |||  |||| |||||||||||||||||||||||||||    
T  23560121 tgcctaaagtgaaccatggaaattggaattagaaaattgttaaaacttacaagtgcttacatatatatcacaacaaatacttacatgagtgacaagatta 23560220  T
Q  208 ggagattcgttttcaacataaaaacctcgacttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaa 307  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560221 ggagattcgttttcgacataaaaacctctacttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaa 23560320  T
Q  308 gtccatccgcagcatattctggtgccatgtagccactgcaacatacaatcgaaacaaaaacaataaaaattagaacagtcacaaaaattatcaaattcag 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23560321 gtccatccgcagcatattctggtgccatgtagccactgcaacatacaatcgaaacaaaaacaataaagtttagaacagtcacaaaaattatcaaattcag 23560420  T
Q  408 cttggtactgagatacttactaagttccaacaactcggcttgtatttccatgagtctgatctaatccaaagattctagctatgccaaaatctgatatttt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560421 cttggtactgagatacttactaagttccaacaactcggcttgtatttccatgagtctgatctaatccaaagattctagctatgccaaaatctgatatttt 23560520  T
Q  508 cgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560521 cgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggca 23560620  T
Q  608 attccgcaaataatgttgaagcgctttggccaatctagcagtttgcttttggtatc 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23560621 attccgcaaataatgttgaagcgctttggccaatctagcagtttgcttttggtatc 23560676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 612
Target Start/End: Complemental strand, 23555654 - 23555593
Alignment:
Q  551 tctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattcc 612  Q
    |||||||| || ||||||| ||| ||||||||||| | ||||||||||||||| ||||||||    
T  23555654 tctctatgtatgatcctcaatcttgaatcttgatgtaaataaagaagacctcgagcaattcc 23555593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 1107648 - 1107494
Alignment:
Q  490 gccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaaga 589  Q
    ||||||||||||||||||||||||||  |  | ||| |||||||| || |||||||| || |||||||| || ||||||| |||||||||||||||||||    
T  1107648 gccaaaatctgatattttcgggttcatatcattatctagcaaaatgttacttggttttagatctctatgtatgatcctcaatctagaatcttgatgaaga 1107549  T
Q  590 taaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatcta 644  Q
    |||| ||| || || || ||||| || || ||||| |||||||| | ||||||||    
T  1107548 taaataagtccacgagcgattccacatatgatgttaaagcgcttggaccaatcta 1107494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 530 - 651
Target Start/End: Complemental strand, 1077377 - 1077256
Alignment:
Q  530 aaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagc 629  Q
    |||||||| |||||||| || |||| ||| || ||||||| |||||||||||||||||||||||  || || ||||||||||| |||| |||||||||||    
T  1077377 aaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagataaatcagtccacgggcaattccacaaacaatgttgaagc 1077278  T
Q  630 gctttggccaatctagcagttt 651  Q
    ||||   ||||||||| |||||    
T  1077277 gcttaaaccaatctagaagttt 1077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 633
Target Start/End: Complemental strand, 1050474 - 1050371
Alignment:
Q  530 aaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagc 629  Q
    |||||||| |||||||| || |||| ||| || ||||| | |||||||||||||||||||||||  || || ||||||| ||| ||||| ||||||||||    
T  1050474 aaaatattacttggttttagatctcgatgtatgatccttaatctagaatcttgatgaagataaatcagtccacgggcaactccacaaatgatgttgaagc 1050375  T
Q  630 gctt 633  Q
    ||||    
T  1050374 gctt 1050371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 633
Target Start/End: Complemental strand, 1091217 - 1091114
Alignment:
Q  530 aaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagc 629  Q
    |||||||| |||||||| || |||| ||| || ||||||| |||||||||||||||||||||||  || || || |||| ||| ||||| ||||||||||    
T  1091217 aaaatattacttggttttagatctcgatgtatgatcctcaatctagaatcttgatgaagataaatcagtccacgagcaactccacaaatgatgttgaagc 1091118  T
Q  630 gctt 633  Q
    ||||    
T  1091117 gctt 1091114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 630
Target Start/End: Complemental strand, 13855117 - 13855062
Alignment:
Q  575 gaatcttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagcg 630  Q
    ||||||||||||||||||||||| ||||| ||||||||  | ||||||||||||||    
T  13855117 gaatcttgatgaagataaagaagccctcgagcaattccaaatataatgttgaagcg 13855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 612
Target Start/End: Original strand, 5524631 - 5524720
Alignment:
Q  523 atcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattcc 612  Q
    |||||| | |||||||||||  ||||| |||||||| || || ||  || ||||||||||||||||||| || || ||||| ||||||||    
T  5524631 atcaagaagaatattgcttgtcttgagatctctatgtatgattctttgtgtagaatcttgatgaagatatagcagccctcgagcaattcc 5524720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 5855368 - 5855300
Alignment:
Q  523 atcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagata 591  Q
    |||||| | |||||||||||  ||||| |||||||| ||||| || ||| ||||||||||||| |||||    
T  5855368 atcaagaagaatattgcttgtcttgagatctctatgtattattcttagtgtagaatcttgatgcagata 5855300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 481 - 591
Target Start/End: Complemental strand, 31708305 - 31708195
Alignment:
Q  481 tctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatct 580  Q
    |||||| || ||||||||||||||||| ||||||||||||| ||| | ||||| ||| |||| |||||| ||||||||||| ||||| | || |||||||    
T  31708305 tctagccattccaaaatctgatatttttgggttcaacttgtgatccaacaaaacattacttgctttgagatctctatgaataatccttaatcgagaatct 31708206  T
Q  581 tgatgaagata 591  Q
    |||||||||||    
T  31708205 tgatgaagata 31708195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 491 - 661
Target Start/End: Complemental strand, 31724961 - 31724791
Alignment:
Q  491 ccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagat 590  Q
    ||||||||||||||||| || |||||  | ||||| || |||| ||||||   ||||||||||||||| |  ||||||| || |||||||||||||||||    
T  31724961 ccaaaatctgatatttttggattcaaagtatcatctagtaaaacattgctgcttttgaggtctctatggacaatcctcaatcgagaatcttgatgaagat 31724862  T
Q  591 aaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatctagcagtttgcttttggta 661  Q
    | | ||| ||||  |||||||| || || |||| ||| || |||||||||||||||| ||| |||||||||    
T  31724861 acataagccctctagcaattccacagattatgtggaaacgttttggccaatctagcaatttacttttggta 31724791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 491 - 661
Target Start/End: Complemental strand, 31702406 - 31702236
Alignment:
Q  491 ccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagat 590  Q
    ||||||||||||||||| || |||||  | ||||| || |||| ||| | || |||||| |||||||| |  |||| || || |||||||||||||||||    
T  31702406 ccaaaatctgatatttttggattcaaagtatcatctagtaaaacattacctgttttgagatctctatggacaatccgcaatcgagaatcttgatgaagat 31702307  T
Q  591 aaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatctagcagtttgcttttggta 661  Q
    | | ||| ||||  |||||||| || || |||| ||| ||||||||||||||||||| ||| |||||||||    
T  31702306 acataagccctctagcaattccacagattatgtggaaacgctttggccaatctagcaatttacttttggta 31702236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 491 - 661
Target Start/End: Complemental strand, 31717736 - 31717566
Alignment:
Q  491 ccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagat 590  Q
    ||||||||||||||||| || |||||  | ||||| || |||| ||||||   |||||| |||||||| |  ||||||| || |||||||||||||||||    
T  31717736 ccaaaatctgatatttttggattcaaagtatcatctagtaaaacattgctgcttttgagatctctatggacaatcctcaatcgagaatcttgatgaagat 31717637  T
Q  591 aaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatctagcagtttgcttttggta 661  Q
    | | ||| ||||  |||||||| || || |||| ||| || |||||||||||||||| ||| |||||||||    
T  31717636 acataagccctctagcaattccacagattatgtggaaacgttttggccaatctagcaatttacttttggta 31717566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 647
Target Start/End: Complemental strand, 31733144 - 31732977
Alignment:
Q  480 ttctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatc 579  Q
    |||||||| | ||||||||||||||||| || ||||| || || || || |||| ||| |||| |||||| |||||||| || ||||| | ||  |||||    
T  31733144 ttctagctgttccaaaatctgatatttttggattcaaattatcgtcgagtaaaacattacttgctttgagatctctatggataatccttaatcgggaatc 31733045  T
Q  580 ttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatctagca 647  Q
    ||| |||||||| |  || ||||  |||||||||||||| || | ||| ||||||| |||||||||||    
T  31733044 ttggtgaagatacacgagccctcttgcaattccgcaaattatatggaaccgctttgaccaatctagca 31732977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 647
Target Start/End: Complemental strand, 31746045 - 31745878
Alignment:
Q  480 ttctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatc 579  Q
    |||||||| | ||||||||||||||||| || ||||| || || || || |||| ||| |||| |||||| |||||||| || ||||| | ||  |||||    
T  31746045 ttctagctgttccaaaatctgatatttttggattcaaattatcgtcgagtaaaacattacttgctttgagatctctatggataatccttaatcgggaatc 31745946  T
Q  580 ttgatgaagataaagaagacctcgggcaattccgcaaataatgttgaagcgctttggccaatctagca 647  Q
    ||| |||||||| |  || ||||  |||||||||||||| || | ||| ||||||| |||||||||||    
T  31745945 ttggtgaagatacacgagccctcttgcaattccgcaaattatatggaaccgctttgaccaatctagca 31745878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 591
Target Start/End: Complemental strand, 31697273 - 31697104
Alignment:
Q  422 acttactaagttccaacaactcggcttgtatttccatgagtctgatctaatccaaagattctagctatgccaaaatctgatattttcgggttcaacttgt 521  Q
    |||||||| |||||||| ||||   |||||||||| | | |||| |||  ||||||   ||| || || ||||||||||||||||| || ||||||||||    
T  31697273 acttactatgttccaactactctatttgtatttccttcaatctggtctcctccaaaagatctggccattccaaaatctgatatttttggattcaacttgt 31697174  T
Q  522 catcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagata 591  Q
    |||| | ||| |  || |||| |||||| ||||||||||| || || | || ||||||||||||||||||    
T  31697173 catccaacaatacgttacttgctttgagatctctatgaataattcttaatcgagaatcttgatgaagata 31697104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 31733385 - 31733277
Alignment:
Q  239 ttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgta 338  Q
    ||||||| ||||||||||||||||  |  ||||| || || || || || ||||||||||| ||||| | ||||||  ||||||||||||||||||||||    
T  31733385 ttcttttgccacatataatctccaataataaaatgccgaagctaaaaacgtcagatttcaccgaaaataatccatcaacagcatattctggtgccatgta 31733286  T
Q  339 gccactgca 347  Q
     ||||||||    
T  31733285 cccactgca 31733277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 591
Target Start/End: Complemental strand, 31740701 - 31740591
Alignment:
Q  480 ttctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatc 579  Q
    |||||||| | ||||||||||||||||| || ||||| ||||| || ||||||| ||| |||| ||||||||||||||| || || || | || ||||||    
T  31740701 ttctagctgttccaaaatctgatatttt-ggattcaagttgtcgtcgagcaaaacattacttgctttgaggtctctatggataattcttaatcgagaatc 31740603  T
Q  580 ttgatgaagata 591  Q
    ||| ||||||||    
T  31740602 ttggtgaagata 31740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 646
Target Start/End: Complemental strand, 36366482 - 36366358
Alignment:
Q  522 catcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    ||||||| | ||| |||||||  || || |||||||| || ||||| | |||||||||||| |||||||| ||||| ||||  || |||||||  |||||    
T  36366482 catcaagtagaatgttgcttgccttaagatctctatggatgatcctaaatctagaatcttggtgaagatacagaagtcctctagctattccgcttataat 36366383  T
Q  622 gttgaagcgctttggccaatctagc 646  Q
    |||||||||  || |||||||||||    
T  36366382 gttgaagcgtgtttgccaatctagc 36366358  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 31702668 - 31702567
Alignment:
Q  247 ccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgc 346  Q
    |||| ||||||||| | ||  ||||| ||||| ||||| ||||| |||||||| |||||  |||||||   |||||| |||||||||||||| |||||||    
T  31702668 ccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 31702569  T
Q  347 aa 348  Q
    ||    
T  31702568 aa 31702567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 31717998 - 31717897
Alignment:
Q  247 ccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgc 346  Q
    |||||||||||||| | ||  ||||| ||||| ||||| || || |||||||| |||||  |||||||   |||||| |||||||||||||| |||||||    
T  31717998 ccacatataatctctaacagtaaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 31717899  T
Q  347 aa 348  Q
    ||    
T  31717898 aa 31717897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 31725223 - 31725122
Alignment:
Q  247 ccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgc 346  Q
    |||||||||||||| | ||  ||||| ||||| ||||| || || |||||||| |||||  |||||||   |||||| |||||||||||||| |||||||    
T  31725223 ccacatataatctctaacaataaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 31725124  T
Q  347 aa 348  Q
    ||    
T  31725123 aa 31725122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 621
Target Start/End: Complemental strand, 36435908 - 36435759
Alignment:
Q  472 tccaaagattctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagt 571  Q
    |||||| |||||||| || ||||||||||| ||||| || ||||      ||||||| | || |||||| | ||| || ||||||||||||||  ||||     
T  36435908 tccaaatattctagccataccaaaatctgagattttgggattcattgcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagc 36435809  T
Q  572 ctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  36435808 cttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 36435759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 31740941 - 31740833
Alignment:
Q  239 ttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgta 338  Q
    ||||||| |||| |||||| || | ||  ||||||||||| || || |||||||||||||| ||||| | | ||||  ||||||| || |||||||||||    
T  31740941 ttcttttgccacgtataatttctaacaataaaattccaaagctaaaaacatcagatttcaccgaaaacaattcatcaacagcatactcgggtgccatgta 31740842  T
Q  339 gccactgca 347  Q
     ||||||||    
T  31740841 tccactgca 31740833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 621
Target Start/End: Complemental strand, 36376331 - 36376261
Alignment:
Q  551 tctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  36376331 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36376261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 621
Target Start/End: Complemental strand, 36429376 - 36429306
Alignment:
Q  551 tctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  36429376 tctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36429306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 36366740 - 36366667
Alignment:
Q  274 ccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgtagccactgca 347  Q
    ||||||||||| |||||||||||||| || || | |||||||  |||||| ||||| | ||| |||||||||||    
T  36366740 ccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccactgca 36366667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 621
Target Start/End: Complemental strand, 36399843 - 36399694
Alignment:
Q  472 tccaaagattctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagt 571  Q
    |||||| |||||||| || || |||||||| ||||| || ||||  |   ||||||| | || |||||| | ||| || ||||||||||||||  ||||     
T  36399843 tccaaatattctagccataccgaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagc 36399744  T
Q  572 ctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    || |||||||| |||||||| | || |||||| ||||| || ||||||||    
T  36399743 cttgaatcttggtgaagatataaaacacctcgagcaatgccacaaataat 36399694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 31746286 - 31746178
Alignment:
Q  239 ttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgccatgta 338  Q
    ||||||| ||||| ||||||||||  |  |||||||| || ||  | || ||||| ||||| ||||| | ||||||  ||||||| ||||||||||||||    
T  31746286 ttcttttgccacagataatctccaataataaaattccgaagctataaacgtcagacttcactgaaaacaatccatcaacagcatactctggtgccatgta 31746187  T
Q  339 gccactgca 347  Q
     ||||||||    
T  31746186 cccactgca 31746178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 603
Target Start/End: Original strand, 2707321 - 2707448
Alignment:
Q  476 aagattctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctag 575  Q
    ||||||||||| ||||||||||| |||||||| || ||||| |   |||| | ||| ||||| ||||| || ||||||||||| ||||| || | ||| |    
T  2707321 aagattctagccatgccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttg 2707420  T
Q  576 aatcttgatgaagataaagaagacctcg 603  Q
    |||||  |||||||||||| ||||||||    
T  2707421 aatctctatgaagataaagcagacctcg 2707448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 602
Target Start/End: Original strand, 2682025 - 2682154
Alignment:
Q  473 ccaaagattctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtc 572  Q
    ||||| |||||||| || ||||| ||||||||||| || ||||  ||| | ||||| | ||| |||||||  ||||| || ||||| || ||||| ||||    
T  2682025 ccaaatattctagccatcccaaagtctgatatttttggattcattttgccgtcaagtagaatgttgcttgccttgagatccctatggataatcctgagtc 2682124  T
Q  573 tagaatcttgatgaagataaagaagacctc 602  Q
    | ||||| ||||| ||||||||||| ||||    
T  2682125 ttgaatcatgatgcagataaagaagccctc 2682154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 621
Target Start/End: Complemental strand, 34219029 - 34218953
Alignment:
Q  545 ttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 621  Q
    ||||| ||||| || || ||||| | ||||||||||| ||||||||||||||| ||||| |||||||| || |||||    
T  34219029 ttgagatctctgtggataatccttaatctagaatcttcatgaagataaagaaggcctcgagcaattccacagataat 34218953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 594
Target Start/End: Original strand, 2717091 - 2717209
Alignment:
Q  476 aagattctagctatgccaaaatctgatattttcgggttcaacttgtcatcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctag 575  Q
    ||||||||||| |||||||| || |||||||| || ||||  |   |||| | ||||||||| || ||||| ||||||||||| ||||| || | ||| |    
T  2717091 aagattctagccatgccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcg 2717190  T
Q  576 aatcttgatgaagataaag 594  Q
    |||||  ||||||||||||    
T  2717191 aatctctatgaagataaag 2717209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 532 - 620
Target Start/End: Original strand, 34192609 - 34192697
Alignment:
Q  532 aatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataa 620  Q
    ||||||||| |  ||||| ||||| || || ||||| | ||||||||||| ||||||||| ||||| ||||| ||||| || |||||||    
T  34192609 aatattgctggtcttgagatctctgtggataatccttaatctagaatcttcatgaagatagagaagtcctcgagcaatcccacaaataa 34192697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 20231600 - 20231547
Alignment:
Q  472 tccaaagattctagctatgccaaaatctgatattttcgggttcaacttgtcatc 525  Q
    ||||||||||||||| || ||||| ||||||||||| || |||||||| |||||    
T  20231600 tccaaagattctagccataccaaagtctgatatttttggattcaacttctcatc 20231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 610
Target Start/End: Original strand, 22689435 - 22689472
Alignment:
Q  573 tagaatcttgatgaagataaagaagacctcgggcaatt 610  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  22689435 tagaatcttgatgaagataaagaagtcctcgagcaatt 22689472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 47584404 - 47584368
Alignment:
Q  479 attctagctatgccaaaatctgatattttcgggttca 515  Q
    |||||||| |||||||||||||||||||| |||||||    
T  47584404 attctagccatgccaaaatctgatatttttgggttca 47584368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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