View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17814_low_21 (Length: 385)

Name: NF17814_low_21
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17814_low_21
NF17814_low_21
[»] chr5 (22 HSPs)
chr5 (29-260)||(3096907-3097138)
chr5 (24-179)||(6368326-6368481)
chr5 (84-254)||(1525428-1525597)
chr5 (67-257)||(21952119-21952311)
chr5 (38-259)||(21915626-21915847)
chr5 (156-257)||(27998281-27998383)
chr5 (24-257)||(10639023-10639257)
chr5 (35-84)||(15370763-15370812)
chr5 (168-251)||(14748950-14749034)
chr5 (205-257)||(34272930-34272982)
chr5 (203-254)||(5848401-5848452)
chr5 (155-258)||(7678338-7678441)
chr5 (228-257)||(9235000-9235029)
chr5 (184-257)||(16454598-16454671)
chr5 (62-127)||(17212846-17212911)
chr5 (186-259)||(21093665-21093738)
chr5 (228-257)||(28186990-28187019)
chr5 (220-257)||(32516481-32516518)
chr5 (221-275)||(43558116-43558172)
chr5 (205-257)||(1275173-1275225)
chr5 (205-257)||(1287911-1287963)
chr5 (33-97)||(38578987-38579051)
[»] chr1 (16 HSPs)
chr1 (157-257)||(26016296-26016397)
chr1 (24-259)||(6640852-6641094)
chr1 (65-257)||(18793310-18793503)
chr1 (24-87)||(7921653-7921716)
chr1 (36-260)||(40419380-40419602)
chr1 (155-257)||(4379862-4379965)
chr1 (173-250)||(39140388-39140466)
chr1 (49-257)||(9592485-9592694)
chr1 (205-257)||(49347715-49347767)
chr1 (24-257)||(30202452-30202686)
chr1 (205-257)||(1210653-1210705)
chr1 (205-257)||(9599716-9599768)
chr1 (228-260)||(16273139-16273171)
chr1 (25-137)||(21275628-21275740)
chr1 (64-108)||(26016231-26016275)
chr1 (205-257)||(43240703-43240755)
[»] chr3 (15 HSPs)
chr3 (24-257)||(38849820-38850054)
chr3 (36-135)||(50632273-50632372)
chr3 (201-259)||(42510331-42510389)
chr3 (168-225)||(50632185-50632242)
chr3 (158-257)||(2341036-2341136)
chr3 (103-254)||(55244107-55244259)
chr3 (186-257)||(653859-653930)
chr3 (35-257)||(25191116-25191339)
chr3 (23-125)||(50632436-50632538)
chr3 (205-257)||(33272350-33272402)
chr3 (189-257)||(49841503-49841571)
chr3 (205-256)||(28245345-28245396)
chr3 (24-122)||(28245163-28245261)
chr3 (227-257)||(46431993-46432023)
chr3 (205-257)||(52138708-52138760)
[»] chr8 (15 HSPs)
chr8 (30-255)||(38328131-38328357)
chr8 (75-257)||(16351166-16351350)
chr8 (160-252)||(39953591-39953684)
chr8 (183-252)||(42493631-42493700)
chr8 (155-258)||(30783361-30783464)
chr8 (228-260)||(2518710-2518742)
chr8 (220-259)||(29520583-29520622)
chr8 (186-257)||(44681398-44681469)
chr8 (156-257)||(13171971-13172073)
chr8 (24-94)||(25985266-25985336)
chr8 (24-122)||(36565699-36565797)
chr8 (227-259)||(10824480-10824512)
chr8 (33-73)||(30748232-30748272)
chr8 (205-257)||(39946765-39946817)
chr8 (186-258)||(45512817-45512889)
[»] chr7 (21 HSPs)
chr7 (30-132)||(43793491-43793593)
chr7 (183-255)||(36514529-36514601)
chr7 (32-125)||(12965677-12965769)
chr7 (186-258)||(25579392-25579464)
chr7 (205-257)||(34869328-34869380)
chr7 (205-252)||(35559321-35559368)
chr7 (157-215)||(41948377-41948436)
chr7 (24-257)||(11593686-11593920)
chr7 (207-257)||(14593671-14593721)
chr7 (207-257)||(16013194-16013244)
chr7 (24-122)||(36651720-36651818)
chr7 (24-122)||(36869747-36869845)
chr7 (24-122)||(37616642-37616740)
chr7 (24-257)||(38606731-38606965)
chr7 (220-257)||(33072877-33072914)
chr7 (33-97)||(18637312-18637376)
chr7 (33-97)||(18650747-18650811)
chr7 (24-84)||(24550185-24550245)
chr7 (205-257)||(31005131-31005183)
chr7 (205-257)||(33350128-33350180)
chr7 (205-257)||(35906523-35906575)
[»] chr2 (17 HSPs)
chr2 (24-260)||(33594590-33594825)
chr2 (24-260)||(7292714-7292951)
chr2 (24-257)||(2610254-2610488)
chr2 (202-257)||(7825263-7825318)
chr2 (30-137)||(12904700-12904807)
chr2 (49-257)||(3865823-3866032)
chr2 (220-257)||(42092442-42092479)
chr2 (209-257)||(4598886-4598934)
chr2 (220-259)||(9647925-9647964)
chr2 (24-122)||(452080-452178)
chr2 (183-257)||(23714580-23714654)
chr2 (183-257)||(24102252-24102326)
chr2 (157-257)||(41763363-41763464)
chr2 (220-257)||(45077671-45077708)
chr2 (202-254)||(19337174-19337226)
chr2 (205-257)||(36183359-36183411)
chr2 (208-256)||(41779055-41779103)
[»] chr4 (20 HSPs)
chr4 (33-247)||(10775754-10775969)
chr4 (32-245)||(22421042-22421257)
chr4 (188-259)||(54470098-54470169)
chr4 (24-164)||(39754787-39754927)
chr4 (173-257)||(11389595-11389680)
chr4 (202-259)||(17900385-17900442)
chr4 (173-257)||(31458903-31458988)
chr4 (155-259)||(44860711-44860816)
chr4 (202-257)||(33709824-33709879)
chr4 (173-257)||(49739116-49739201)
chr4 (171-257)||(25967589-25967674)
chr4 (155-257)||(45205170-45205273)
chr4 (24-122)||(23906759-23906857)
chr4 (192-257)||(1777337-1777402)
chr4 (220-257)||(20105793-20105830)
chr4 (192-257)||(48174415-48174480)
chr4 (221-257)||(2588905-2588941)
chr4 (205-257)||(12494658-12494710)
chr4 (205-257)||(31960136-31960188)
chr4 (205-257)||(48622863-48622915)
[»] chr6 (8 HSPs)
chr6 (202-259)||(33998324-33998381)
chr6 (186-257)||(6056092-6056163)
chr6 (154-259)||(6641729-6641838)
chr6 (24-73)||(6641917-6641966)
chr6 (202-259)||(33083963-33084020)
chr6 (227-260)||(7513302-7513335)
chr6 (153-212)||(7079990-7080050)
chr6 (205-257)||(28085284-28085336)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 3096907 - 3097138
Alignment:
Q  29 aaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaat 128  Q
    |||| ||| ||||||||  |||||||| |||| |||||||||||||||| | || ||||| |||||||| ||| ||| |||| ||||||||||||||||     
T  3096907 aaggggatataaaccatcaaattcaagttgggtggttgaaatggatgagagccttaggtgttttatgtgatgtgaaaataccgcttaagttgaaggaaa- 3097005  T
Q  129 tttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatg 227  Q
    ||||||||||||||||  ||||| |||||||||||| | |||||| |||||| | ||||| |||||||| ||| || ||||||| ||   | ||| || |    
T  3097006 tttttatcgaacaacggtaagaccgacgatgttgtacgggacaaaatgttggacggtaaataaccaacacgaacattaagtaagtgtgacagagacgagg 3097105  T
Q  228 atgttgcattggatgtgtggtaagactagatga 260  Q
    ||||| | ||||||||||  ||| |||||||||    
T  3097106 atgttacgttggatgtgttataaaactagatga 3097138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 6368481 - 6368326
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    ||||||| ||||| ||||||||||||| |||||||   ||||||||| |||||||| || | ||| || ||||| ||| ||| |||| |||||||||||     
T  6368481 aataaaaagagatataaaccattgaatccaagctgaatggttgaaatcgatgagtgccttaagtgtttcatgtgatgtgaaaatacctcttaagttgaaa 6368382  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttg 179  Q
    ||||||||||||||||||     ||||| || ||||||||||| ||||| ||||||    
T  6368381 gaaattttttatcgaacagttgtaagactgatgatgttgtatgagacaacgtgttg 6368326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 1525428 - 1525597
Alignment:
Q  84 aggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc- 182  Q
    ||||| |||||||| ||  |||||||| ||||||||||||| || ||||||||||||||||  ||||| | |||||||||||| |||  ||||||||||     
T  1525428 aggtgttttatgtgatgcaaaagtaccgcttaagttgaagggaaatttttatcgaacaacggtaagaccggcgatgttgtatgggac--agtgttgggcg 1525525  T
Q  183 gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    || ||||||||||| ||| ||||| ||||| | |   | |||| |||||| | | |||||||||||||||||    
T  1525526 gtgaagaaccaacatgaacataaaataagctttgctgaaatgaggatgttacgtcggatgtgtggtaagact 1525597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 21952119 - 21952311
Alignment:
Q  67 aaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag-gaaattttttatcgaacaacgaaaagacagacgatgttgtat 165  Q
    ||||||| ||||| |||| ||| |||||||| ||  |||||||| || ||||||||| ||| |||||||||| | |  |  || |  | ||||| ||||     
T  21952119 aaatggaggagtgcctcatgtgttttatgtgatgcgaaagtaccgctcaagttgaagtgaatttttttatcggaaagtggtaaaatgggcgatgctgtac 21952218  T
Q  166 gtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    | |||||||||||||||| | ||||||||||| |||  |||| |||| |||| |||||||| |||||||| ||| ||||||||||||||||||    
T  21952219 gggacaaagtgttgggcgcttaagaaccaacacgaacttaaattaagtgtagaaaagatgaggatgttgcgttgcatgtgtggtaagactaga 21952311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 259
Target Start/End: Original strand, 21915626 - 21915847
Alignment:
Q  38 taaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttatcg 137  Q
    ||||||||||| | |||| ||||  ||||||||||| ||||| ||||| || |||||| | ||  ||||||  || |||||||||| ||||||||||||     
T  21915626 taaaccattgagtccaagttgggtagttgaaatggaggagtgcctcagatgttttatgcgatgcaaaagtaagacataagttgaagcaaattttttatca 21915725  T
Q  138 aacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcat 236  Q
     ||| ||  |||||   ||| |||||| |||||||||| ||||| | | ||||||||||||||  |||||||||  |||  | | |||| || ||||| |    
T  21915726 gacaccggtaagaccaccgacgttgtacgtgacaaagtattgggtgatgaagaaccaacaagagcataaagtaa-tgtaacacaaatgaggacgttgctt 21915824  T
Q  237 tggatgtgtggtaagactagatg 259  Q
    || |||||||||||| |||||||    
T  21915825 tgaatgtgtggtaagtctagatg 21915847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 27998281 - 27998383
Alignment:
Q  156 gatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    ||||||||||| ||||||||||||||  ||||| |||||||| |||  | || ||||| ||  | |||||| |||||||| |||||||||||||||||||    
T  27998281 gatgttgtatgagacaaagtgttgggatgtaaaaaaccaacacgaaagtgaattaagcatatcagagatgaggatgttgcgttggatgtgtggtaagact 27998380  T
Q  255 aga 257  Q
    |||    
T  27998381 aga 27998383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 10639023 - 10639257
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | || ||||| ||| || | |   ||||||||||||||||||||     
T  10639023 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaagttgaaa 10639122  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    | ||  || ||||||||| |     ||| |||| |||||||||  ||  ||||||||||| | ||||  ||||| ||  || ||||||| |||| | |||    
T  10639123 ggaaagttctatcgaacagcagtccgaccgacgttgttgtatggtacggagtgttgggcggtgaagagtcaacatgagaatcaagtaagtgtagcagaga 10639222  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||| |||||||| ||||||| ||||||||||||||    
T  10639223 tgaggatgttgcgttggatgagtggtaagactaga 10639257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 15370812 - 15370763
Alignment:
Q  35 atgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctca 84  Q
    |||||||||||||||||||||||  | |||||||||||| ||||||||||    
T  15370812 atgtaaaccattgaattcaagctaagtggttgaaatggaggagtgtctca 15370763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 14748950 - 14749034
Alignment:
Q  168 gacaaagtgttgggcgt-aaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaag 251  Q
    |||||| |||||||||| ||||||||||||  || ||||  |||||| |  | |||||| |||||||||||||||||||||||||    
T  14748950 gacaaaatgttgggcgttaaagaaccaacacaaacataagttaagcgcaacagagatgaggatgttgcattggatgtgtggtaag 14749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 34272930 - 34272982
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||||||||||| ||||||||||||||    
T  34272930 aagtaagtgtagcagagatgaggatgttgcattggatgagtggtaagactaga 34272982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 5848452 - 5848401
Alignment:
Q  203 taaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    |||| |||| |||| | |||||| ||||||||||||||||||||||||||||    
T  5848452 taaaataagtgtagcagagatgaggatgttgcattggatgtgtggtaagact 5848401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 7678338 - 7678441
Alignment:
Q  155 cgatgttgtatgtgacaaagtgttgggcgtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    ||||||||||||  ||  |||||||||||| ||||||||||| ||  ||| |  ||| |||||  |||||| |||||||| |||||| ||||| ||||||    
T  7678338 cgatgttgtatggaacggagtgttgggcgtgaagaaccaacacgagaatagaacaagtgtagtggagatgaggatgttgcgttggatctgtggcaagact 7678437  T
Q  255 agat 258  Q
    ||||    
T  7678438 agat 7678441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 9235000 - 9235029
Alignment:
Q  228 atgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||||||||||||||||||||    
T  9235000 atgttgcattggatgtgtggtaagactaga 9235029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 16454598 - 16454671
Alignment:
Q  184 taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||| ||   ||||||||| |||| | |||||| |||| |||||||||||| |||||| ||||||    
T  16454598 taaagaaccaacacgagagtaaagtaagtgtagcagagatgaggatgatgcattggatgtttggtaaaactaga 16454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 17212846 - 17212911
Alignment:
Q  62 ggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaa 127  Q
    |||||||||||| ||||| ||||| || |||||||  ||| | ||||||||| |||||||||||||    
T  17212846 ggttgaaatggaggagtgcctcagatgttttatgtaatgtgatagtaccactcaagttgaaggaaa 17212911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 21093665 - 21093738
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    ||||||||||| ||  ||||| |||| |||||  | |||| |||||||| ||| ||||||||||||||||||||    
T  21093665 aagaaccaacacgagaataaaataagtgtagtggatatgaggatgttgcgttgtatgtgtggtaagactagatg 21093738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 28187019 - 28186990
Alignment:
Q  228 atgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||||||||||||||||||||    
T  28187019 atgttgcattggatgtgtggtaagactaga 28186990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 32516481 - 32516518
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  32516481 agatgatgatgttgtgttggatgtgtggtaagactaga 32516518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 43558172 - 43558116
Alignment:
Q  221 gatgatgatgttgcattggatgtgtggtaagactaga--tgacatcatttgagagag 275  Q
    ||||| |||||||| ||||||||||||||||||||||  ||||| |||| |||||||    
T  43558172 gatgaggatgttgcgttggatgtgtggtaagactagacgtgacaacattagagagag 43558116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 1275173 - 1275225
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||| ||| | |||||| |||||||| ||||||| ||||||||||||||    
T  1275173 aagtaagcatagcagagatgaggatgttgcgttggatgagtggtaagactaga 1275225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 1287963 - 1287911
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  1287963 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 1287911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 38579051 - 38578987
Alignment:
Q  33 agatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtg 97  Q
    |||||||||| || |||| ||||||| | |||||||||||| ||||| |||| ||| ||||||||    
T  38579051 agatgtaaacgatcgaatccaagctgagtggttgaaatggaggagtgcctcatgtgttttatgtg 38578987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 26016296 - 26016397
Alignment:
Q  157 atgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagacta 255  Q
    ||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  26016296 atgttttatgggacaaagtgttgggcggtaaagaaccaacaagaacataaagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagacta 26016395  T
Q  256 ga 257  Q
    ||    
T  26016396 ga 26016397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 6640852 - 6641094
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctca---ggtgctttatgtgttgttaaagtaccacttaagttg 120  Q
    |||| |||||| |||||||||||| || |||| |||| ||||||||| || ||||| || |   | || |||||||| |   |||||||| |||||||||    
T  6640852 aatagaaggaggtgtaaaccattggatccaagttgggtggttgaaatagaggagtgcctaattagttgttttatgtgatccgaaagtaccgcttaagttg 6640951  T
Q  121 aagg-aaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaa--gcgtag 216  Q
    |||| ||||||||||||| |||||   ||| | |||||||||||| | | ||||||||||| || | ||||||||||| ||| | |||||||  | ||||    
T  6640952 aagggaaattttttatcggacaactgtaagtccgacgatgttgtacgaggcaaagtgttggacgatgaagaaccaacacgaatacaaagtaatagtgtag 6641051  T
Q  217 taaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
     | | ||||||||||||| |||||||||||||| |||||||||    
T  6641052 cagaaatgatgatgttgcgttggatgtgtggtatgactagatg 6641094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 18793503 - 18793310
Alignment:
Q  65 tgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttatcgaacaacgaaaagacagacgatgttgta 164  Q
    ||||||||| |||||||||||||| |||||||| ||  ||||||| | |||||||||| | |   ||||||| ||||||   |||||  ||  |||||||    
T  18793503 tgaaatggaggagtgtctcaggtgttttatgtgatgcgaaagtacaagttaagttgaatggagaattttatcaaacaacagcaagacctacagtgttgta 18793404  T
Q  165 tgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    || || | ||||||||||| ||||||||||  |  || ||||||||||||||  | | ||||||||||||| |||||||||||| |||||||||    
T  18793403 tgagatatagtgttgggcggtaaagaaccagaacaaacataaagtaagcgtaacataaatgatgatgttgcgttggatgtgtggaaagactaga 18793310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 7921653 - 7921716
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggt 87  Q
    |||| ||||||||||||||||| ||||||||| ||||  ||||||||||||||| |||||||||    
T  7921653 aatagaaggagatgtaaaccatcgaattcaagttgggttgttgaaatggatgagggtctcaggt 7921716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 40419380 - 40419602
Alignment:
Q  36 tgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttat 135  Q
    ||||| |||| |||||||||||||| |||||||| | | ||||| ||||  || |||||||| ||  ||| |||| |||   |  |||| ||||||||||    
T  40419380 tgtaatccatcgaattcaagctgggtggttgaaacgaaggagtgcctcaactgttttatgtgatgcgaaaataccgctt---tgtaagggaattttttat 40419476  T
Q  136 cgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgc 234  Q
     | ||| ||  ||||  |||||||||||| |  ||| ||||||||| | ||||||||||||| ||| |||||||||| |||| | |||||| |||| |||    
T  40419477 aggacatcggtaagatcgacgatgttgtacggaacagagtgttgggtggtaaagaaccaacacgaacataaagtaagtgtagcagagatgaggatggtgc 40419576  T
Q  235 attggatgtgtggtaagactagatga 260  Q
     ||| |||| |||||| |||||||||    
T  40419577 gttgaatgtatggtaaaactagatga 40419602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 4379862 - 4379965
Alignment:
Q  155 cgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagac 253  Q
    |||||||||| | |||| |||||| ||| |||||||||||||| ||| |||||  |||| |||   |||||| |||||||  ||||||||||||||||||    
T  4379862 cgatgttgtacgggacagagtgttaggcagtaaagaaccaacacgaaaataaataaagcttagctgagatgaggatgttgtgttggatgtgtggtaagac 4379961  T
Q  254 taga 257  Q
    ||||    
T  4379962 taga 4379965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 39140388 - 39140466
Alignment:
Q  173 agtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaa 250  Q
    |||||||||| || |||||||| || ||| || |||||||||||||| |||||| |||||||| ||||||| |||||||    
T  39140388 agtgttgggcagttaagaaccatcatgaaaatcaagtaagcgtagtagagatgaggatgttgcgttggatgagtggtaa 39140466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 9592485 - 9592694
Alignment:
Q  49 attcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttatcgaacaacgaaaa 148  Q
    ||||||| |||| ||||||||||||  || ||||| |||| ||| || | |   |||||||||||||||||||| | ||  || ||||| ||||     |    
T  9592485 attcaagttgggtggttgaaatggagaagagtctcgggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacaatagtca 9592584  T
Q  149 gacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtgg 247  Q
    ||| |||| |||||||||  ||  ||||||||||| | ||||| ||||| ||  || ||||||| |||| | |||||| |||||||| ||||||| ||||    
T  9592585 gactgacgttgttgtatggtacggagtgttgggcggttaagaatcaacatgagaatcaagtaagtgtagcagagatgaggatgttgcgttggatgagtgg 9592684  T
Q  248 taagactaga 257  Q
    ||||||||||    
T  9592685 taagactaga 9592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 49347767 - 49347715
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| |||||||| |||||||| ||||||| ||||||||||||||    
T  49347767 aagtaagtgtagcaaagatgaggatgttgcgttggatgagtggtaagactaga 49347715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 30202686 - 30202452
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| |||||||| |||| | |||||||| ||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||     
T  30202686 aatagaagcagatgtaagccatcgtattcaagccgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaa 30202587  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    | ||  || ||||| |||||     ||| | || |||||| ||  ||| ||||||||||| | ||||  ||||| ||  || ||||||| |||| | |||    
T  30202586 ggaaagttctatcggacaacagtccgaccggcgttgttgtgtggtacagagtgttgggcggttaagagtcaacatgagaatcaagtaagtgtagcagaga 30202487  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||| |||||||| ||||||| ||||||||||||||    
T  30202486 tgaggatgttgcgttggatgagtggtaagactaga 30202452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 1210653 - 1210705
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  1210653 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 1210705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 9599768 - 9599716
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||| | |||||| |||||||  ||||||| ||||||||||||||    
T  9599768 aagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 9599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 16273171 - 16273139
Alignment:
Q  228 atgttgcattggatgtgtggtaagactagatga 260  Q
    ||||||| |||||||||||||||||||||||||    
T  16273171 atgttgcgttggatgtgtggtaagactagatga 16273139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 21275628 - 21275740
Alignment:
Q  25 ataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaagg 124  Q
    |||||||  |||||||| |||||||| ||||||| | |||||||||  |  || |||||| ||||||||| || |   ||||||||||||||| ||||||    
T  21275628 ataaaagttgatgtaaatcattgaatccaagctgagtggttgaaataaagaagagtctcatgtgctttatttgataagaaagtaccacttaagctgaagg 21275727  T
Q  125 aaattttttatcg 137  Q
     ||  ||||||||    
T  21275728 gaaaattttatcg 21275740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 26016231 - 26016275
Alignment:
Q  64 ttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagta 108  Q
    |||||||||| |||||||||||||| |||||||| || |||||||    
T  26016231 ttgaaatggaggagtgtctcaggtgttttatgtgatgctaaagta 26016275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 43240755 - 43240703
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  43240755 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 43240703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 38849820 - 38850054
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| |||||||| |||||| |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||     
T  38849820 aatagaagcagatgtaagccattgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataacaaagtaccacttaagttgaaa 38849919  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    |||||||||||||| |||||    | || ||||||||||||||  |||||||||||||| || ||||  ||||| ||  || ||||||| |||| | |||    
T  38849920 gaaattttttatcggacaacagtcacaccgacgatgttgtatggtacaaagtgttgggcggttaagagtcaacacgagaatcaagtaagtgtagcagaga 38850019  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||| ||||||||  |||||| || |||||||||||    
T  38850020 tgaggatgttgcgctggatgagtagtaagactaga 38850054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 50632372 - 50632273
Alignment:
Q  36 tgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttat 135  Q
    |||||||||| |||||||| ||||| |||||||||||| ||||| || |  || |||||||| ||  ||||||||||| ||||||||||| |||||||||    
T  50632372 tgtaaaccatagaattcaacctgggtggttgaaatggaggagtgccttaaatgttttatgtgatgagaaagtaccactcaagttgaaggatattttttat 50632273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 42510389 - 42510331
Alignment:
Q  201 gataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    |||||| ||||| ||| | |||||| |||||||||||||||||||||||||||||||||    
T  42510389 gataaaataagcatagcagagatgaggatgttgcattggatgtgtggtaagactagatg 42510331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 50632242 - 50632185
Alignment:
Q  168 gacaaagtgttgggcgtaaagaaccaacaagaagataaagtaagcgtagtaaagatga 225  Q
    |||||||||||||| |||||||||||||| ||| ||||| ||||||||||| ||||||    
T  50632242 gacaaagtgttgggggtaaagaaccaacatgaaaataaattaagcgtagtagagatga 50632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 2341136 - 2341036
Alignment:
Q  158 tgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactag 256  Q
    ||||||||| |||||| ||||||| | ||||||| ||||  ||  ||||| ||||  ||||  |||||| ||||||||||||||||||||||||||||||    
T  2341136 tgttgtatgagacaaaatgttgggtggtaaagaatcaacgcgagaataaaataaggatagtggagatgaggatgttgcattggatgtgtggtaagactag 2341037  T
Q  257 a 257  Q
    |    
T  2341036 a 2341036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 55244107 - 55244259
Alignment:
Q  103 aaagtaccacttaagttgaaggaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaag 201  Q
    ||||||||||| |||||||||| ||  |||||||  ||| |   ||||| ||| |||||||||  ||||||||||||| | || ||||||||||| |||     
T  55244107 aaagtaccactcaagttgaagggaaaattttatctgacagctgtaagaccgacaatgttgtatcggacaaagtgttggactgtcaagaaccaacatgaaa 55244206  T
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    ||||| |||||||||||  ||||| ||||||    || |||||||||||||||    
T  55244207 ataaattaagcgtagtattgatgaggatgttttgatgaatgtgtggtaagact 55244259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 653930 - 653859
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||| ||  |||||||| |||||| |||||||| ||| |||| ||||||||||||||| ||||||    
T  653930 aagaaccaacacgataataaagtacgcgtagcaaagatgaggattttgcgttggatgtgtggtaaaactaga 653859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 257
Target Start/End: Original strand, 25191116 - 25191339
Alignment:
Q  35 atgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaatttttta 134  Q
    ||||||| ||| | |||||||||||| ||||||||||||  || |||||||||| ||| || | |   |||||||||||||||||||| | ||  || ||    
T  25191116 atgtaaatcatcgtattcaagctgggtggttgaaatggagaagagtctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaggttcta 25191215  T
Q  135 tcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttg 233  Q
    ||||||||     |||| |   ||||||||||  ||| |||||||||| || ||||  ||||| ||   ||||||||| |||| | |||||| |||||||    
T  25191216 tcgaacaatagtcagaccggaaatgttgtatggtacagagtgttgggctgttaagagtcaacacgagagtaaagtaagtgtagcagagatgaggatgttg 25191315  T
Q  234 cattggatgtgtggtaagactaga 257  Q
    |  |||||| ||||||||||||||    
T  25191316 cgctggatgagtggtaagactaga 25191339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 50632538 - 50632436
Alignment:
Q  23 caataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    ||||| ||| ||||| ||||||| |||||||| ||||| |||||| ||||| ||||| || | ||| |||||||| ||  ||||||||||| ||||| ||    
T  50632538 caatagaagtagatggaaaccatagaattcaacctgggtggttgagatggaggagtgccttaagtgttttatgtgatgagaaagtaccactcaagtttaa 50632439  T
Q  123 gga 125  Q
    |||    
T  50632438 gga 50632436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 33272402 - 33272350
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||||||||||| ||||||||||||||    
T  33272402 aagtaagtgtagcagagatgaggatgttgcattggatgagtggtaagactaga 33272350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 49841503 - 49841571
Alignment:
Q  189 aaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||| ||||| |||| |||| | |||||| |||||||  |||||||||| |||||||||||    
T  49841503 aaccaacaagaaaataaattaagtgtagcatagatgaggatgttgtgttggatgtgtagtaagactaga 49841571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 28245345 - 28245396
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactag 256  Q
    ||||||| |||| |||||||| |||||||| ||||||| |||||||||||||    
T  28245345 aagtaagtgtagcaaagatgaggatgttgcgttggatgagtggtaagactag 28245396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 28245163 - 28245261
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || ||||||| || ||| || | |   ||||||||||||||||||||    
T  28245163 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagtctcagttgttttgtgcgataagaaagtaccacttaagttgaa 28245261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 46432023 - 46431993
Alignment:
Q  227 gatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||||||||||||||||||||||    
T  46432023 gatgttgcattggatgtgtggtaagactaga 46431993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 52138708 - 52138760
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  52138708 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 52138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 38328357 - 38328131
Alignment:
Q  30 aggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaatt 129  Q
    |||||||||||| ||||||||  ||| ||||  ||||||||| | |||||||| ||||| |||||||| | | ||| ||||  |||||||||||| ||      
T  38328357 aggagatgtaaatcattgaatctaagttgggtagttgaaatgaaggagtgtcttaggtgttttatgtgatatgaaaataccgtttaagttgaagggaaaa 38328258  T
Q  130 ttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatga 228  Q
     |||||||||||||   |||||  || ||| |||| | || | || ||||||| ||||||||||||||  || |||||||||| |||||  |||||| ||    
T  38328257 atttatcgaacaacagtaagaccaacaatggtgtacgagatagagagttgggcagtaaagaaccaacacaaacataaagtaagtgtagtggagatgacga 38328158  T
Q  229 tgttgcattggatgtgtggtaagacta 255  Q
    |||| | |||||||| |||| ||||||    
T  38328157 tgttacgttggatgtatggtgagacta 38328131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 16351166 - 16351350
Alignment:
Q  75 gagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa-ggaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaa 173  Q
    |||||||||||||| |||||||| ||| |||||| | || |||||||| ||||||||||||||| | | ||  ||||| |  ||||||||| | |||| |    
T  16351166 gagtgtctcaggtgttttatgtgatgtgaaagtaacgctcaagttgaagggaaattttttatcgtatatcggtaagaccgttgatgttgtacgggacaga 16351265  T
Q  174 gtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||  |||| |||||||||||| | ||| ||||  ||||| |||   |||||| |||||||| |||||| |||||||||||||||    
T  16351266 gtgcagggcggtaaagaaccaatatgaacataagttaagcatagatgagatgaagatgttgcgttggatatgtggtaagactaga 16351350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 39953684 - 39953591
Alignment:
Q  160 ttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaaga 252  Q
    ||||||| |||| ||||||| ||| ||||||||||||| ||| ||||||| ||||||| | ||||||  ||||||| |||||||||||||||||    
T  39953684 ttgtatgggacagagtgttgagcggtaaagaaccaacacgaacataaagttagcgtagcagagatgagaatgttgcgttggatgtgtggtaaga 39953591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 42493700 - 42493631
Alignment:
Q  183 gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaaga 252  Q
    |||||||||||||||||| ||||| |||| |||| |||||||| |||||||| |||| ||||||||||||    
T  42493700 gtaaagaaccaacaagaaaataaattaagtgtagcaaagatgaggatgttgcgttggttgtgtggtaaga 42493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 30783464 - 30783361
Alignment:
Q  155 cgatgttgtatgtgacaaagtgttgggcgtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    ||||||||||||  |||||||||||||||| ||||||||||| ||  ||| | |||| |||||  |||||| ||| |||| |||||| ||||| ||||||    
T  30783464 cgatgttgtatggaacaaagtgttgggcgtgaagaaccaacacgataatagaataagtgtagtggagatgaggatcttgcgttggatctgtggcaagact 30783365  T
Q  255 agat 258  Q
    ||||    
T  30783364 agat 30783361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 2518742 - 2518710
Alignment:
Q  228 atgttgcattggatgtgtggtaagactagatga 260  Q
    |||||||||||||||||||||||||||||||||    
T  2518742 atgttgcattggatgtgtggtaagactagatga 2518710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 29520583 - 29520622
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  29520583 agatgaggatgttgcgttggatgtgtggtaagactagatg 29520622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 44681469 - 44681398
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||| || ||||| |||||  |  | |||||| ||||||| |||||||||||||||||||||||    
T  44681469 aagaaccaacaaaaaaataaaataagcacaacatagatgaggatgttgtattggatgtgtggtaagactaga 44681398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 13172073 - 13171971
Alignment:
Q  156 gatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    |||||||||||  ||| ||||||||||| | |||||||||||  || ||||| |||||  |  | ||||||  |||||||||||||||||| ||||||||    
T  13172073 gatgttgtatggtacagagtgttgggcggttaagaaccaacataaaaataaattaagcacatcagagatgagaatgttgcattggatgtgtagtaagact 13171974  T
Q  255 aga 257  Q
    |||    
T  13171973 aga 13171971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 25985266 - 25985336
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttat 94  Q
    |||| |||||||||||||||||||||| |||  ||||  ||||||||||| ||||| |||| ||| |||||    
T  25985266 aatagaaggagatgtaaaccattgaatccaaaatgggtagttgaaatggaggagtgcctcaagtgttttat 25985336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 36565797 - 36565699
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||    
T  36565797 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaa 36565699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 10824512 - 10824480
Alignment:
Q  227 gatgttgcattggatgtgtggtaagactagatg 259  Q
    |||||||||||||| ||||||||||||||||||    
T  10824512 gatgttgcattggacgtgtggtaagactagatg 10824480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 30748232 - 30748272
Alignment:
Q  33 agatgtaaaccattgaattcaagctgggaggttgaaatgga 73  Q
    ||||||||||||| ||||||||||| || ||||||||||||    
T  30748232 agatgtaaaccatcgaattcaagctaggtggttgaaatgga 30748272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 39946765 - 39946817
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  39946765 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 39946817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 45512889 - 45512817
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagat 258  Q
    ||||||||||| ||| ||||| ||||| |||   ||||||  ||||| | |||||||||||||||||||||||    
T  45512889 aagaaccaacacgaaaataaaataagcatagcggagatgagaatgtttcgttggatgtgtggtaagactagat 45512817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 43793593 - 43793491
Alignment:
Q  30 aggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaatt 129  Q
    ||||||||||||||||  |||  ||||| || |||||||||||| ||||  ||||||||  ||||||| ||| |||||||| ||||||||||||||||||    
T  43793593 aggagatgtaaaccatcaaatctaagctaggtggttgaaatggaggagttcctcaggtgtattatgtgatgtgaaagtaccgcttaagttgaaggaaatt 43793494  T
Q  130 ttt 132  Q
    |||    
T  43793493 ttt 43793491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 36514601 - 36514529
Alignment:
Q  183 gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagacta 255  Q
    |||||||||||||| ||| ||||| |||| |||| | |||||| |||||||| ||||||||||||||||||||    
T  36514601 gtaaagaaccaacacgaaaataaattaagtgtagcagagatgaggatgttgcgttggatgtgtggtaagacta 36514529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 12965677 - 12965769
Alignment:
Q  32 gagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaagga 125  Q
    ||||||||| |||||||||||||| |||| |||||||||||| |||||  ||| ||| |||||||| |   ||| ||||||| |||||||||||    
T  12965677 gagatgtaatccattgaattcaagttgggtggttgaaatgga-gagtgcatcaagtgttttatgtgatacgaaaataccactcaagttgaagga 12965769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 25579464 - 25579392
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagat 258  Q
    ||||||||||| ||  ||||| |||||||||   |||||| |||||||| ||||||||||||||| |||||||    
T  25579464 aagaaccaacacgagaataaaataagcgtagaggagatgaggatgttgcgttggatgtgtggtaatactagat 25579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 34869328 - 34869380
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||||| |||||| |||||||| ||||||| ||||||||||||||    
T  34869328 aagtaagtgtagtagagatgaggatgttgcgttggatgagtggtaagactaga 34869380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 35559368 - 35559321
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaaga 252  Q
    ||||||| ||||||||||||| |||||||| ||||||| |||||||||    
T  35559368 aagtaagtgtagtaaagatgaggatgttgcgttggatgagtggtaaga 35559321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 41948377 - 41948436
Alignment:
Q  157 atgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgta 215  Q
    |||||||||| |||| |||||||||| |||||||||||||| ||| ||||| ||||||||    
T  41948377 atgttgtatgagacagagtgttgggctgtaaagaaccaacatgaaaataaattaagcgta 41948436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 11593686 - 11593920
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||     
T  11593686 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataaaaaagtaccacttaagttgaaa 11593785  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    | ||  || ||||| |||||     ||| | || |||||||||  ||  |||||||| || | ||||  ||||| ||  || ||||||| |||| | |||    
T  11593786 ggaaagttctatcggacaacagttcgaccggcgttgttgtatggtacggagtgttggacggttaagagtcaacatgagaatcaagtaagtgtagcagaga 11593885  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||| |||||||| ||||||| ||||||||||||||    
T  11593886 tgaggatgttgcgttggatgagtggtaagactaga 11593920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 14593671 - 14593721
Alignment:
Q  207 gtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  14593671 gtaatcgtagcagagatgaggatgttgcgttggatgtgtggtaagactaga 14593721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 16013194 - 16013244
Alignment:
Q  207 gtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  16013194 gtaatcgtagcagagatgaggatgttgcgttggatgtgtggtaagactaga 16013244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 36651720 - 36651818
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||    
T  36651720 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaa 36651818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 36869845 - 36869747
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||||||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||| | ||| || | |   ||||||||||||||||||||    
T  36869845 aataaaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggggttttgtgcgataagaaagtaccacttaagttgaa 36869747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 37616642 - 37616740
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||||| |||||||||||| ||||||||||||  || | |||| ||| ||| || | |   ||||||||||||||||||||    
T  37616642 aatagaagcagatgtaagccattgtattcaagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagttgaa 37616740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 38606731 - 38606965
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| ||||||||||||| | |||||||||||| ||||||||||||  || | || ||||| ||| || | |   ||||||||||||||| ||||     
T  38606731 aatagaagcagatgtaaaccatcgtattcaagctgggtggttgaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaagctgaaa 38606830  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    | ||  || ||||| |||||    |||| | | ||||||||||  ||  |||||||||| || |||| |||||| ||   ||||||||| ||||   |||    
T  38606831 ggaaagttctatcggacaacagtcagaccggcaatgttgtatggtacggagtgttgggcggttaagagccaacacgagagtaaagtaagtgtagcggaga 38606930  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||| |||||||  |||||| ||||||||||||||    
T  38606931 tgataatgttgcgctggatgagtggtaagactaga 38606965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 33072877 - 33072914
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  33072877 agatgatgatgttgcgttggatgagtggtaagactaga 33072914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 18637312 - 18637376
Alignment:
Q  33 agatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtg 97  Q
    ||||||||||||| |||| ||||||| |  ||||||||||| ||||| |||| ||| ||||||||    
T  18637312 agatgtaaaccatcgaatccaagctgagcagttgaaatggaggagtgcctcatgtgttttatgtg 18637376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 18650747 - 18650811
Alignment:
Q  33 agatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtg 97  Q
    ||||||||||||| |||| ||||||| |  ||||||||||| ||||| |||| ||| ||||||||    
T  18650747 agatgtaaaccatcgaatccaagctgagcagttgaaatggaggagtgcctcatgtgttttatgtg 18650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 24550245 - 24550185
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctca 84  Q
    |||| |||||||||||||   ||||||||||| |||| |||||||||||| ||| ||||||    
T  24550245 aatagaaggagatgtaaattgttgaattcaagttgggtggttgaaatggaggagggtctca 24550185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 31005131 - 31005183
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  31005131 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 31005183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 33350180 - 33350128
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  33350180 aagtaagtgtagcagagatgaggatgttgccttggatgagtggtaagactaga 33350128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 35906575 - 35906523
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  35906575 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 35906523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 33594825 - 33594590
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||||||||||||| |||  ||||||| ||||| |||||| ||||| |||||||| ||||| |||| ||| ||  ||| || | ||||||||  ||    
T  33594825 aatagaaggagatgtaaaacatcaaattcaaactgggtggttgagatggaggagtgtcttaggtgttttaagtgatgcgaaaataacgcttaagttagag 33594726  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    |||||||||  | || ||||   ||||| ||||| |||| ||||| ||||||||| |||| ||||||| ||||| ||| |||||||||| || | | |||    
T  33594725 gaaatttttattaga-caacagtaagaccgacgacgttgaatgtgccaaagtgttaggcggtaaagaatcaacatgaatataaagtaagagtggcataga 33594627  T
Q  223 tgatgatgttgcattggatgtgtggtaagactagatga 260  Q
    ||| ||| |||  ||||||||||||| | |||||||||    
T  33594626 tgaggatattgt-ttggatgtgtggtgaaactagatga 33594590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 7292714 - 7292951
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| |||||||||||||||||  ||| |||| |||| |||||||||| | ||||| |||||||| ||||| || ||  |||||||  || |||||||||    
T  7292714 aatagaaggagatgtaaaccatcaaatccaagttgggtggttgaaatgaaggagtgactcaggtgttttatatgatgcgaaagtactgctcaagttgaag 7292813  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttggg-cgtaaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
      ||  ||| ||   ||||||  ||||| ||| |||||||| | ||||| ||||||||  || ||||||||||| ||| ||||| ||||||||||| | |    
T  7292814 agaaaatttcatatgacaacggtaagaccgacaatgttgtacgggacaaggtgttgggtggtgaagaaccaacatgaacataaaataagcgtagtagaaa 7292913  T
Q  223 tgatgatgttgcattggatgtgtggtaagactagatga 260  Q
    | |  ||||||  ||||||| || ||| ||||||||||    
T  7292914 taagaatgttgtgttggatgagttgtatgactagatga 7292951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 2610254 - 2610488
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||| |||||||||||||   |||||||||||| ||||||||||||  || | |||||||| |||||| | |   ||||||||||||||||||||     
T  2610254 aatagaagcagatgtaaaccatcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttatgcgataagaaagtaccacttaagttgaaa 2610353  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaaga 222  Q
    | ||  || ||||| |||||    |||| | || |||||||||  ||  |||||||||| || ||||  ||||| ||  || ||||||| |||| | |||    
T  2610354 ggaaagttctatcggacaacagtcagactggcgttgttgtatggtacggagtgttgggcggttaagagtcaacatgagaatcaagtaagtgtagcagaga 2610453  T
Q  223 tgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||| |||| ||| ||||||| ||||||||||||||    
T  2610454 tgaggatgctgcgttggatgagtggtaagactaga 2610488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 7825263 - 7825318
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||||||| | |||| | |||||||| ||||||||||||||||||||||    
T  7825263 ataaagtaagcgtagcagagattaggatgttgcgttggatgtgtggtaagactaga 7825318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 12904700 - 12904807
Alignment:
Q  30 aggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaatt 129  Q
    |||||||||||||||| ||||||||| | || |||||||||  | |||||||||||||| ||||| || ||  ||||||  ||| |||||| | ||| ||    
T  12904700 aggagatgtaaaccatagaattcaagttaggtggttgaaataaacgagtgtctcaggtgttttatatgatgcgaaagtattactcaagttggaagaattt 12904799  T
Q  130 ttttatcg 137  Q
    ||||||||    
T  12904800 ttttatcg 12904807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 3865823 - 3866032
Alignment:
Q  49 attcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttttatcgaacaacgaaaa 148  Q
    |||||||||||| ||||||||||||  || | ||||| || ||| |||| |   ||||||| |||||||||||| | ||  || ||||| |||||    |    
T  3865823 attcaagctgggtggttgaaatggagaagagcctcagatgttttgtgtgataagaaagtactacttaagttgaaaggaaagttctatcggacaacagtca 3865922  T
Q  149 gacagacgatgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtgg 247  Q
    ||| |||| |||||||||  ||  |||||||| || | ||||  ||||| ||  || ||||||| |||| | ||||||||||||||| ||||||| ||||    
T  3865923 gaccgacgttgttgtatggtacggagtgttggacggttaagagtcaacatgagaatcaagtaagtgtagcagagatgatgatgttgcgttggatgagtgg 3866022  T
Q  248 taagactaga 257  Q
    ||||||||||    
T  3866023 taagactaga 3866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 42092442 - 42092479
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||||||||||||||||| |||||||||||    
T  42092442 agatgatgatgttgcattggatgtgtagtaagactaga 42092479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 4598934 - 4598886
Alignment:
Q  209 aagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||| | | ||||||||||||| ||||||||||||||||||||||    
T  4598934 aagcgtagcagaaatgatgatgttgcgttggatgtgtggtaagactaga 4598886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 9647964 - 9647925
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  9647964 agatgaggatgttgcgttggatgtgtggtaagactagatg 9647925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 452178 - 452080
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||    
T  452178 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaa 452080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 23714654 - 23714580
Alignment:
Q  183 gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||||| ||| ||||| ||||| ||| | |||| |  ||||||  ||||||||||||||||||||||    
T  23714654 gtaaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactaga 23714580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 24102326 - 24102252
Alignment:
Q  183 gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||||| ||| ||||| ||||| ||| | |||| |  ||||||  ||||||||||||||||||||||    
T  24102326 gtaaagaaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactaga 24102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 41763464 - 41763363
Alignment:
Q  157 atgttgtatgtgacaaagtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagacta 255  Q
    ||||||||||  ||| ||||||||||| | ||||||||||| ||   ||||||||| ||||   |||||| ||||||||  |||||| ||||||||||||    
T  41763464 atgttgtatggtacagagtgttgggcggttaagaaccaacacgagagtaaagtaagtgtagcggagatgaggatgttgcgatggatgagtggtaagacta 41763365  T
Q  256 ga 257  Q
    ||    
T  41763364 ga 41763363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 45077671 - 45077708
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  45077671 agatgaggatgttgcgttggatgtgtggtaagactaga 45077708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 19337226 - 19337174
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagact 254  Q
    ||||| ||||||||||  |||||| |||||| | |||||||||||||||||||    
T  19337226 ataaaataagcgtagtggagatgaggatgttacgttggatgtgtggtaagact 19337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 36183359 - 36183411
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  36183359 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 36183411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 41779103 - 41779055
Alignment:
Q  208 taagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactag 256  Q
    ||||||||| ||||||||  ||||||| ||||||||| |||||||||||    
T  41779103 taagcgtagcaaagatgagaatgttgcgttggatgtggggtaagactag 41779055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 10775969 - 10775754
Alignment:
Q  33 agatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaattttt 132  Q
    ||||||||||||| ||||||||  |||| |||||||||||| ||||| || |  || |||||||| ||  |||| ||| || |||||||||| ||  |||    
T  10775969 agatgtaaaccatagaattcaaaatgggtggttgaaatggaggagtgccttacttgttttatgtgatgcgaaagcacccctcaagttgaagggaaaattt 10775870  T
Q  133 tatcgaacaacgaaaagacagacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgt 231  Q
    ||| | ||||||  |||||  | ||||||||||| || | |||||||||| ||||||||| ||    || ||||| ||||||||| | ||||||||||||    
T  10775869 tattggacaacggtaagaccaatgatgttgtatgggaaagagtgttgggcggtaaagaactaatgcaaaaataaattaagcgtagcagagatgatgatgt 10775770  T
Q  232 tgcattggatgtgtgg 247  Q
    ||  ||||||| ||||    
T  10775769 tgtgttggatgcgtgg 10775754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 22421257 - 22421042
Alignment:
Q  32 gagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaaggaaatttt 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||  || || ||   |  ||||| || | | ||||||||||| ||||||||||  | |||    
T  22421257 gagatgtaaaccattgaattcaagctgggtggttgaaatggaaaagggtatcgctttttttatatgatatgaaagtaccactaaagttgaagggtaattt 22421158  T
Q  132 ttatcgaacaacgaaaagacagacgatgttgtatgtgacaa-agtgttggg-cgtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgat 229  Q
    |||||  |||||   ||||| ||||||||| ||||  |||| ||||| |||  || |||| |||||| ||| ||||| ||||| ||||| |||| | |||    
T  22421157 ttatcagacaactgtaagaccgacgatgttatatggaacaagagtgtcgggatgtcaagatccaacatgaaaataaattaagcatagtagagataaggat 22421058  T
Q  230 gttgcattggatgtgt 245  Q
    ||||| ||||||||||    
T  22421057 gttgcgttggatgtgt 22421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 54470098 - 54470169
Alignment:
Q  188 gaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    ||||||||| | | ||||| |||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  54470098 gaaccaacacgtaaataaattaagcgtaatagagatgaggatgttgcattggatgtgtggtaagactagatg 54470169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 39754927 - 39754787
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaag 123  Q
    |||| ||||||||||||| |||||||| |||| |  | |||||||||| |  |||| |||| ||| |||||||| ||  ||| |||||||||||||||||    
T  39754927 aatagaaggagatgtaaatcattgaatccaagtttagtggttgaaatgaaccagtgcctcaagtgttttatgtgatgcgaaaataccacttaagttgaag 39754828  T
Q  124 gaaattttttatcgaacaacgaaaagacagacgatgttgta 164  Q
    ||| | |||||||  ||||||  | ||| ||||||||||||    
T  39754827 gaattattttatcagacaacggtatgaccgacgatgttgta 39754787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 11389595 - 11389680
Alignment:
Q  173 agtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||| | ||||||||||  ||  ||||||||||||||| | |||||| ||||||| |||||||||||||||| ||||||    
T  11389595 agtgttgggcggttaagaaccaactcgagaataaagtaagcgtagcagagatgaggatgttggattggatgtgtggtaaaactaga 11389680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 17900385 - 17900442
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    ||||||||||||||| | | |||| |||||||| ||||||||||||||||||||||||    
T  17900385 ataaagtaagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatg 17900442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 31458903 - 31458988
Alignment:
Q  173 agtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||| || ||||||||||| ||| |||||||||| |||| | |||||| |||||||| |||| || ||||||||||||||    
T  31458903 agtgttgggcagttaagaaccaacacgaaaataaagtaagtgtagcacagatgaggatgttgcgttggttgagtggtaagactaga 31458988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 44860711 - 44860816
Alignment:
Q  155 cgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagac 253  Q
    |||||||||||| |||  |||||||||| || |||||||||  |||| ||||| |||| |||| | | |||| |||||||  ||||||||||||||||||    
T  44860711 cgatgttgtatgggactgagtgttgggctgtgaagaaccaaggagaaaataaattaagtgtagcagaaatgaggatgttgtgttggatgtgtggtaagac 44860810  T
Q  254 tagatg 259  Q
    ||||||    
T  44860811 tagatg 44860816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 33709824 - 33709879
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||| ||||| ||| | ||||||||||||||| ||||||||||||||||||||||    
T  33709824 ataaattaagcctagcagagatgatgatgttgcgttggatgtgtggtaagactaga 33709879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 49739201 - 49739116
Alignment:
Q  173 agtgttgggcg-taaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||| ||||||||||||||||   |||| ||||||||||  | |||  |||||||| || |||||||||||||||||||    
T  49739201 agtgttgggcgataaagaaccaacaagagagtaaaataagcgtagtggaaatggggatgttgcgttagatgtgtggtaagactaga 49739116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 25967674 - 25967589
Alignment:
Q  171 aaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||| ||||| |||||||||||  ||||  ||||||||||  || ||| ||||||||  |||||||||||||||||||||    
T  25967674 aaagtgttgggcagtaaaaaaccaacaagagaataa--taagcgtagtggaggtgaggatgttgcgatggatgtgtggtaagactaga 25967589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 45205273 - 45205170
Alignment:
Q  155 cgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagac 253  Q
    ||||||||||||  ||  |||||||||| || ||||||||||| ||  || ||||||||||||   |||||| |||||||  ||||||| ||||||||||    
T  45205273 cgatgttgtatggtacggagtgttgggcagttaagaaccaacacgagaatcaagtaagcgtagcggagatgaggatgttgtgttggatgagtggtaagac 45205174  T
Q  254 taga 257  Q
    ||||    
T  45205173 taga 45205170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 23906857 - 23906759
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatggatgagtgtctcaggtgctttatgtgttgttaaagtaccacttaagttgaa 122  Q
    |||| ||| |||||||| |||| | |||||||||||| ||||||||||||  || | |||||||| ||| || | |   ||||||||||||||||||||    
T  23906857 aatagaagcagatgtaagccatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaa 23906759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 1777402 - 1777337
Alignment:
Q  192 caacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||| ||| || |||||||  ||| |||||||| |||||||| ||||||| ||||||||||||||    
T  1777402 caacatgaaaatcaagtaagtatagcaaagatgaggatgttgcgttggatgagtggtaagactaga 1777337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 20105830 - 20105793
Alignment:
Q  220 agatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    |||||||||||||||  |||||||||||||||||||||    
T  20105830 agatgatgatgttgcgatggatgtgtggtaagactaga 20105793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 48174480 - 48174415
Alignment:
Q  192 caacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||| ||| || |||||||  ||| |||||||| |||||||| ||||||| ||||||||||||||    
T  48174480 caacatgaaaatcaagtaagtatagcaaagatgaggatgttgcgttggatgagtggtaagactaga 48174415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 2588905 - 2588941
Alignment:
Q  221 gatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  2588905 gatgaggatgttgcgttggatgtgtggtaagactaga 2588941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 12494658 - 12494710
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  12494658 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 12494710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 31960188 - 31960136
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  31960188 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 31960136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 48622915 - 48622863
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  48622915 aagtaagtgtagcagagatgaggatgttgctttggatgagtggtaagactaga 48622863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 33998381 - 33998324
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    ||||| ||||||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  33998381 ataaattaagcgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatg 33998324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 6056163 - 6056092
Alignment:
Q  186 aagaaccaacaagaagataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||||||| ||| || |||||||||||||| | |||  |||||||| ||||||| ||||||||||||||    
T  6056163 aagaaccaacacgaaaatcaagtaagcgtagtagaaatgcggatgttgcgttggatgagtggtaagactaga 6056092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 6641838 - 6641729
Alignment:
Q  154 acgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagcgtagtaaagat---gatgatgttgcattggatgtgtggta 249  Q
    ||||||||||||| || |||||||||||| |||||||| ||||| ||| ||||| ||||||||  ||||||   || |||||||| || ||||| | |||    
T  6641838 acgatgttgtatgggataaagtgttgggcggtaaagaaacaacatgaaaataaattaagcgtaacaaagatgaggaggatgttgcgttcgatgttttgta 6641739  T
Q  250 agactagatg 259  Q
    ||||||||||    
T  6641738 agactagatg 6641729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 6641966 - 6641917
Alignment:
Q  24 aataaaaggagatgtaaaccattgaattcaagctgggaggttgaaatgga 73  Q
    |||| ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  6641966 aatagaaggagatgtaaaccattgaattaaagttgggtggttgaaatgga 6641917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 33083963 - 33084020
Alignment:
Q  202 ataaagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactagatg 259  Q
    ||||||||||||||| | | |||| |||| ||| ||||||||||||||||||||||||    
T  33083963 ataaagtaagcgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatg 33084020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 7513335 - 7513302
Alignment:
Q  227 gatgttgcattggatgtgtggtaagactagatga 260  Q
    |||||||| |||||||||||||||||||||||||    
T  7513335 gatgttgcgttggatgtgtggtaagactagatga 7513302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 7079990 - 7080050
Alignment:
Q  153 gacgatgttgtatgtgacaaagtgttgggc-gtaaagaaccaacaagaagataaagtaagc 212  Q
    ||||||||||||||||| | |||||||||| ||||| ||||||||| || ||||| |||||    
T  7079990 gacgatgttgtatgtgatagagtgttgggcggtaaataaccaacaaaaaaataaattaagc 7080050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 28085284 - 28085336
Alignment:
Q  205 aagtaagcgtagtaaagatgatgatgttgcattggatgtgtggtaagactaga 257  Q
    ||||||| |||| | |||||| |||||||| ||||||| ||||||||||||||    
T  28085284 aagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 28085336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University