View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_22 (Length: 361)
Name: NF17814_low_22
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 34377330 - 34377005
Alignment:
| Q |
17 |
agattctttactggaacatccaaggtattggtaatttggattcccgtattcccttgaaagattttttctttaatcataggccgttgttgatgtttgtggc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377330 |
agattctttactggaacatccaaggtattggtaattcggattcccgtattcccttgaaagattttttctttaatcataggccgttgttgatgtttgtggc |
34377231 |
T |
|
| Q |
117 |
tgaaccaatggtcccttactctaatattcatagatggtattggaatcctacgttagttccgtttgctcttcgcaataggtgccataatggtaatcaaggc |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34377230 |
tgaaccaatggtcccttactctaatattcatagatagtattggaatcctacgttagttctgtttgctcttcgcaataggtgccataatggtaatcaaggc |
34377131 |
T |
|
| Q |
217 |
gacatttccactttcatctcatattttccccgaagggaattgttgtgcggataagcttgcgcatcatggtcacagcttggatgttgtttttggtgggagg |
316 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34377130 |
gacatttccactttcatctcatattttctccgaagggaattgttgtgcggataagcttgcgcatcatggtcacag---ggatgttgtttttggtgggagg |
34377034 |
T |
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| Q |
317 |
cttccccattgtttattagaggtgatttt |
345 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
34377033 |
cttccccattgtttattagagatgatttt |
34377005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 35976310 - 35976641
Alignment:
| Q |
17 |
agattctttactggaacatccaaggtattggtaatttggattcccgtattcccttgaaagattttttctttaatcataggccgttgttgatgtttgtggc |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35976310 |
agattcttgactggaacatccaaggtattggtaattcggattcccgtattgccttgaaagattttttctttaatcataggccgttgttgatgtttgtggc |
35976409 |
T |
|
| Q |
117 |
tgaaccaatggtcccttactctaatattcatagatggtattgg---aatcctacgttagttccgtttgctcttcgcaataggtgccataatggtaatcaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| | |||||| |
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| T |
35976410 |
tgaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttctgtttgctcttcgcaataggtggcataattgcaatcaa |
35976509 |
T |
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| Q |
214 |
ggcgacatttccactttcatctcatattttccccgaagggaattgttgtgcggataagcttgcgcatcatggtcacagcttggatgttgtttttggtggg |
313 |
Q |
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|||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||| |
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| T |
35976510 |
ggcggcatttccactttcatctcatatttttctcgaagggaattgttgtgtggataagcttgtgaatcatggtcacaacttggatgttgtttttggtggg |
35976609 |
T |
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| Q |
314 |
aggcttccccattgtttattagaggtgatttt |
345 |
Q |
| |
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|||||| |||||||||||| |||| ||||||| |
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| T |
35976610 |
aggctttcccattgtttatgagagatgatttt |
35976641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 12879338 - 12879193
Alignment:
| Q |
17 |
agattctttactggaacatccaaggtattggtaatttggattcccgtattcccttgaaagatttttt-ctttaatcataggccgttgttgatgtttgtgg |
115 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| ||||||||||| ||||| ||||| ||||||| |||||||||| |
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| T |
12879338 |
agattctttactggaacatccaaagtat--gtaattcggattcccgtattgcctgtaaagatttttttctttattcatacgccgttg---atgtttgtgg |
12879244 |
T |
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| Q |
116 |
ctgaaccaatggtcccttactctaatattcatagatggtattggaatccta |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12879243 |
ctgaaccaatggtcccttactctaatattcatagatggtattggaatccta |
12879193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 12879187 - 12879123
Alignment:
| Q |
281 |
catggtcacagcttggatgttgtttttggtgggaggcttccccattgtttattagaggtgatttt |
345 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
12879187 |
catggtcacaacttggatgttgtttttggtgggaggctttcccattgtttattagagatgatttt |
12879123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 10378569 - 10378483
Alignment:
| Q |
227 |
ctttcatctcatattttccccgaagggaattgttgtgcggataagcttgcgcatcatggtcacagcttggatgttgtt-tttggtgg |
312 |
Q |
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||||||||||||||||| | |||||| ||||||||| | |||||| | || |||||||||||| ||||| || |||| |||||||| |
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| T |
10378569 |
ctttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgttatttggtgg |
10378483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 31326633 - 31326590
Alignment:
| Q |
228 |
tttcatctcatattttccccgaagggaattgttgtgcggataag |
271 |
Q |
| |
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|||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
31326633 |
tttcatctcatatttttcgcgaaggaaattgttgtgcggataag |
31326590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 35142323 - 35142371
Alignment:
| Q |
228 |
tttcatctcatattttccccgaagggaattgttgtgcggataagcttgc |
276 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
35142323 |
tttcctctcatattttccgtgaaggtaattgttgtgcggataagtttgc |
35142371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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