View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_26 (Length: 291)
Name: NF17814_low_26
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_26 |
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| [»] scaffold0613 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 30249676 - 30249939
Alignment:
| Q |
17 |
atttttaacaacaaccacgcccataatgataaatcaaatattagattttgaggatcccaatgattatggtatgatggcactattggtgatgttaaatggg |
116 |
Q |
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|||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249676 |
atttttaacaacaagcacgcccataataatgaatcaaata---gattttgaggatcccaatgattatggtatgatggcactattggtgatgttaaatggg |
30249772 |
T |
|
| Q |
117 |
tccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcacta |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249773 |
tccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcacta |
30249872 |
T |
|
| Q |
217 |
ttggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249873 |
ttggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcga |
30249939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 25628141 - 25628269
Alignment:
| Q |
98 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
197 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| || || ||| |||||| |||||| | |||||||||||||||| |||||||||||| |
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| T |
25628141 |
attggtgatgttaaatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
25628240 |
T |
|
| Q |
198 |
tggactaaactcttcactattggaccttt |
226 |
Q |
| |
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|||||||||||||||| |||||||||||| |
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| T |
25628241 |
tggactaaactcttcattattggaccttt |
25628269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 77 - 280
Target Start/End: Complemental strand, 29352582 - 29352379
Alignment:
| Q |
77 |
tgattatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggt |
176 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29352582 |
tgattatggtatggtggcacgattggtgatgttaaatgggtccatcgctttgatctcttggtatgtaggcaagactacctttgacatattaattttaggt |
29352483 |
T |
|
| Q |
177 |
gaacttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatat |
276 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
29352482 |
gaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattcaggaacctattggagtagggaggaatggtgatatat |
29352383 |
T |
|
| Q |
277 |
tctt |
280 |
Q |
| |
|
|||| |
|
|
| T |
29352382 |
tctt |
29352379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 34325261 - 34325444
Alignment:
| Q |
101 |
ggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagt-gagtgaatcatg |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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|
| T |
34325261 |
ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatg |
34325360 |
T |
|
| Q |
200 |
gactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcga |
283 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||| |||||| || |||||||| | ||| ||||||||||||||| ||||| |
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| T |
34325361 |
gactaagctcttcactattggaccttttcccttctacattgagagacttattggagcaaggaggaatggtgatatatttttcga |
34325444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 44937867 - 44937806
Alignment:
| Q |
150 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactctt |
211 |
Q |
| |
|
||||| ||| |||||| |||||| |||||||| || |||| |||||||||||||||||||| |
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|
| T |
44937867 |
actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt |
44937806 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 81 - 281
Target Start/End: Original strand, 4027835 - 4028035
Alignment:
| Q |
81 |
tatggtatgatggcactattggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaac |
180 |
Q |
| |
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||||||||| ||||| || |||| |||||||||||||||| |||||||||||||| ||| | | ||||||||||||||||| ||||||||||||| |
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| T |
4027835 |
tatggtatggcggcacaatcggtggtgttaaatgggtccattgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaac |
4027934 |
T |
|
| Q |
181 |
ttggagtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattctt |
280 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||| ||||| |||||||||||||||||| |
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|
| T |
4027935 |
ttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctattgagagacctattggagcagggaggaatggtgatatattctt |
4028034 |
T |
|
| Q |
281 |
c |
281 |
Q |
| |
|
| |
|
|
| T |
4028035 |
c |
4028035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 98 - 281
Target Start/End: Original strand, 30651516 - 30651699
Alignment:
| Q |
98 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
197 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| || | ||| |||||| |||||| | |||||||||||||||| |||||||||||| |
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|
| T |
30651516 |
attggtgatgttaaatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
30651615 |
T |
|
| Q |
198 |
tggactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttc |
281 |
Q |
| |
|
|||||||||||||| | ||||||||||||| || | | || | | |||||||||| ||||| |||||||||||||||||| |
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|
| T |
30651616 |
tggactaaactctttattattggacctttgtccgacctttttacgtatcctattggagcagggagtaatggtgatatattcttc |
30651699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 31777862 - 31777991
Alignment:
| Q |
98 |
attggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatca |
197 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||| | || | | |||||| |||||| | |||||||||||||||| |||||||||||| |
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|
| T |
31777862 |
attggtgatgttaaatggttccattgctttgatctcttggtatgaatacacggccacctttcacatatcagttttaggtgaacttggtgtgagtgaatca |
31777961 |
T |
|
| Q |
198 |
tggactaaactcttcactattggacctttg |
227 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |
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|
| T |
31777962 |
tggactaaactctttattattggacctttg |
31777991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 42637420 - 42637352
Alignment:
| Q |
150 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactatt |
218 |
Q |
| |
|
||||| ||| |||||| |||||| |||||| | || |||| ||||||||||| ||||||||||||||| |
|
|
| T |
42637420 |
actacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactcttcactatt |
42637352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 48742055 - 48741982
Alignment:
| Q |
150 |
actacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacc |
223 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| || |||| ||||| |||||||||||||||| | ||||||| |
|
|
| T |
48742055 |
actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacc |
48741982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 160 - 276
Alignment:
| Q |
107 |
gttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaa |
206 |
Q |
| |
|
|||||||| || ||| || |||||||||| | ||||| | |||||| ||| |||||| |||||| |||||| ||||| || |||||||||||| || |
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|
| T |
160 |
gttaaatgagtgcattgcattgatctcttatcatgtaccaaggactacttttcacatatcaattttgggtgaaattggaaagaatgaatcatggaccaat |
259 |
T |
|
| Q |
207 |
ctcttcactattggacc |
223 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
260 |
cacttcactattggacc |
276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 286360 - 286325
Alignment:
| Q |
246 |
cctattggagtagggaagaatggtgatatattcttc |
281 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
286360 |
cctattggagtagggaagaaaggtgatatattcttc |
286325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 32744976 - 32744853
Alignment:
| Q |
106 |
tgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaa |
205 |
Q |
| |
|
|||||||||||||||| || |||||||| | ||||| | | |||||| ||| |||||| |||| | ||||| |||| ||| ||||||||||| || |
|
|
| T |
32744976 |
tgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggaccaa |
32744877 |
T |
|
| Q |
206 |
actcttcactattggacctttgcc |
229 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
32744876 |
tctcttcactattggaccattgcc |
32744853 |
T |
|
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