View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_28 (Length: 281)
Name: NF17814_low_28
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 29297559 - 29297481
Alignment:
| Q |
16 |
catataacaagcaaaggtaatgatccagtcaagaaagagtaccttaaataaagagttctcttgtattttacaatctgaa |
94 |
Q |
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| T |
29297559 |
catataacaagcaaaggtaatgatccagtcaagaaagagtaccttaaataaagagttctcttgtattttacaatctgaa |
29297481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 29297434 - 29297372
Alignment:
| Q |
211 |
ggtattccagccatattaataaaagatctgatgaaaccttgcctacaaagagtcaagaataat |
273 |
Q |
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| T |
29297434 |
ggtattccagccatattaataaaagatctgatgaaaccttgcctacaaagagtcgagactaat |
29297372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 29297484 - 29297433
Alignment:
| Q |
121 |
tgaatttcaaccatacattgacaatttgagtgtcttggtagtccatatttgg |
172 |
Q |
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| T |
29297484 |
tgaatttcaaccatacattgacaatttgagtgtcttggtggtccatatttgg |
29297433 |
T |
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