View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_29 (Length: 279)
Name: NF17814_low_29
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_29 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 28426380 - 28426131
Alignment:
| Q |
21 |
ggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaagagctgcacagcaggacttgaaga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28426380 |
ggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaagagctgcacaacaggacttgaaga |
28426281 |
T |
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| Q |
121 |
atttcttgatgcatttgttgaccagacaagagagtcattgtggttgagaagcacaaggtttccatcttgacttatgatcaacttgcttgaatcgtctttt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28426280 |
atttcttgatgcatttgttgaccagacaagagagtcattgtggttgagaagcacaaggtttccatcttgacttatgatcaatttgcttgaatcgtctttt |
28426181 |
T |
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| Q |
221 |
gttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatt |
270 |
Q |
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| T |
28426180 |
gttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatt |
28426131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 28417847 - 28417598
Alignment:
| Q |
21 |
ggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccattgttcaagagctgcacagcaggacttgaaga |
120 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28417847 |
ggtcaaacccttgccacaaaaaactttcttcattgttatccttctcatctctaagtactaaattaccattgttcaagagctgcacaacaggacttgaagc |
28417748 |
T |
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| Q |
121 |
atttcttgatgcatttgttgaccagacaagagagtcattgtggttgagaagcacaaggtttccatcttgacttatgatcaacttgcttgaatcgtctttt |
220 |
Q |
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| T |
28417747 |
ctttcttgatgcatttgttgaccaaacaagagagtcattgtggttgagaagcacaaggtttccatcttgacttatgatcaatttgcttgaatcgtctttt |
28417648 |
T |
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| Q |
221 |
gttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatt |
270 |
Q |
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| T |
28417647 |
gttggattgtttcgatttgcaacccaaaccactcttcgaacggggatatt |
28417598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 22692128 - 22692331
Alignment:
| Q |
22 |
gtcaaagccttgccacaaaaaactttcttcatttt---tatccttctcatctctgagcactaaattaccattgttcaagagctgcacagcaggacttgaa |
118 |
Q |
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|||||||||||||||||||||||||||| |||| | | | || ||||| | || ||||||||||| |||| ||| ||||||||| || || |||| |
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| T |
22692128 |
gtcaaagccttgccacaaaaaactttctccattgtcgctgtttatcacatctttaagaactaaattaccgttgtccaaaagctgcacaacacgatttgag |
22692227 |
T |
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| Q |
119 |
gaatttcttgatgcatttgttgacca---gacaagagagtcattgtggttgagaagcacaaggtttccatcttgacttatgatcaacttgcttgaatcgt |
215 |
Q |
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| ||| ||||| ||||| ||||| ||| | ||| ||||| || |||||||||| || ||||||||||| |||||| |||||||||| || |||| |
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| T |
22692228 |
gcattggttgatatgtttgtggaccaccagactaaagactcattttgattgagaagcatgagatttccatcttggcttatggtcaacttgctggagtcgt |
22692327 |
T |
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| Q |
216 |
cttt |
219 |
Q |
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|||| |
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| T |
22692328 |
cttt |
22692331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 10406 - 10510
Alignment:
| Q |
166 |
gagaagcacaaggtttccatcttgacttatgatcaacttgcttgaatcgtcttttgttggattgtttcgatttgcaacccaaaccactcttcgaacgggg |
265 |
Q |
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|||||| ||||| |||| |||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||||| ||||||| ||| ||| |
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| T |
10406 |
gagaagtacaagatttctatcttgacttatgatcaacttgctagaagtgtctttgattggattgtcacgattggcaacccaaacaactcttctaaccggg |
10505 |
T |
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| Q |
266 |
atatt |
270 |
Q |
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||||| |
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| T |
10506 |
atatt |
10510 |
T |
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