View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_31 (Length: 264)
Name: NF17814_low_31
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 9245518 - 9245306
Alignment:
| Q |
21 |
actaggaaaatctgaagatgacatagcaacaagcttcactttgcaataatctttaaatctcccgacggagaagtaatttcca------------------ |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| | || |
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| T |
9245518 |
actaggaaaatctgaagatgacatagcaacaagcttcacttggcaatagtcttttaatctcccgacggagaagtagtggtcactcgaggagaagtctgac |
9245419 |
T |
|
| Q |
103 |
gcaaaagcataaagataggttttagagtcggagttgatgcagggagctgtatttacatactcaggatcatcatttactgctttgctacacttcaagtata |
202 |
Q |
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|||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
9245418 |
gcaaaagcataaagatagcttttggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcactgctttgctacatttcaagtata |
9245319 |
T |
|
| Q |
203 |
ttacgtacaagta |
215 |
Q |
| |
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||| || |||||| |
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|
| T |
9245318 |
ttatgtgcaagta |
9245306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 9335307 - 9335414
Alignment:
| Q |
103 |
gcaaaagcataaagataggttttagagtcggagttgatgcagggagctgtatttacatactcaggatcatcatttactgctttgctacacttcaagtata |
202 |
Q |
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|||||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
9335307 |
gcaaaagcataaagatagcttttggagtcggagctgatgcagggagctgtatccacatactcagtatcatcattcacttgtttgctacacttcaagtata |
9335406 |
T |
|
| Q |
203 |
ttacgtac |
210 |
Q |
| |
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||| |||| |
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|
| T |
9335407 |
ttatgtac |
9335414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 9359033 - 9359135
Alignment:
| Q |
103 |
gcaaaagcataaagataggttttagagtcggagttgatgcagggagctgtatttacatactcaggatcatcatttactgctttgctacacttcaagtata |
202 |
Q |
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|||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
9359033 |
gcaaaagcataaagatagctttcggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcacttgtttgctacaattcaagtata |
9359132 |
T |
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| Q |
203 |
tta |
205 |
Q |
| |
|
||| |
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|
| T |
9359133 |
tta |
9359135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 9358890 - 9358950
Alignment:
| Q |
23 |
taggaaaatctgaagatgacatagcaacaagcttcactttgcaataatctttaaatctccc |
83 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
9358890 |
taggaaaatctgaagatgacatagcaacaagcttcacttggcaataatcttttaatctccc |
9358950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 9335182 - 9335230
Alignment:
| Q |
35 |
aagatgacatagcaacaagcttcactttgcaataatctttaaatctccc |
83 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
9335182 |
aagatgacatagcaacaagcttcacttggcaataatcttttaatctccc |
9335230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 15913216 - 15913027
Alignment:
| Q |
21 |
actaggaaaatctgaagatgacatagcaacaagcttcactttgcaataatctttaaatctcccgacggagaagtaatttccagcaaaagcataaagatag |
120 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |||| || | ||||| || ||| |||| |||| || | |
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| T |
15913216 |
actatgaaaatctgaggatgacatagctacaagcatcactttgcaataatcttttaatttcccaactgtcaagtatcccccggcataagcgtaaacatgg |
15913117 |
T |
|
| Q |
121 |
gttttagagtcggagttgatgcagggagctgtatttacatactcaggatcatcatttactgctttgctacacttcaagtatattacgtac |
210 |
Q |
| |
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|||| ||||| ||| ||||||||||||| |||| || ||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
15913116 |
cttttggagtccgagctgatgcagggagcggtatccacgtactcaggatcatcattcactgatttgctacacttcaagtatattatgtac |
15913027 |
T |
|
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