View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17814_low_33 (Length: 261)

Name: NF17814_low_33
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17814_low_33
NF17814_low_33
[»] scaffold0218 (2 HSPs)
scaffold0218 (11-125)||(14378-14493)
scaffold0218 (189-249)||(14254-14314)
[»] scaffold0091 (3 HSPs)
scaffold0091 (11-125)||(29058-29173)
scaffold0091 (189-261)||(28922-28994)
scaffold0091 (204-261)||(24725-24782)
[»] chr3 (9 HSPs)
chr3 (11-123)||(16642300-16642413)
chr3 (11-124)||(4712799-4712913)
chr3 (11-125)||(14062777-14062892)
chr3 (11-125)||(14055036-14055151)
chr3 (22-122)||(13926858-13926960)
chr3 (202-261)||(16642138-16642197)
chr3 (202-261)||(4712995-4713054)
chr3 (202-261)||(14062981-14063040)
chr3 (203-261)||(14055221-14055279)
[»] chr6 (4 HSPs)
chr6 (11-125)||(14989374-14989489)
chr6 (11-124)||(14980262-14980376)
chr6 (202-261)||(14980458-14980517)
chr6 (89-125)||(10906902-10906938)
[»] chr1 (5 HSPs)
chr1 (11-125)||(51658661-51658776)
chr1 (19-125)||(13882243-13882350)
chr1 (202-261)||(13882462-13882521)
chr1 (18-111)||(1567069-1567166)
chr1 (205-261)||(51658854-51658910)
[»] chr7 (8 HSPs)
chr7 (11-125)||(48376788-48376903)
chr7 (11-125)||(16060513-16060628)
chr7 (22-125)||(4531759-4531864)
chr7 (189-261)||(16060379-16060449)
chr7 (203-261)||(9080211-9080269)
chr7 (89-125)||(9080339-9080375)
chr7 (214-261)||(48376642-48376689)
chr7 (214-261)||(16069015-16069062)
[»] chr8 (6 HSPs)
chr8 (11-125)||(23658527-23658650)
chr8 (11-69)||(23657827-23657885)
chr8 (71-125)||(23657752-23657807)
chr8 (215-261)||(23657653-23657699)
chr8 (215-261)||(23658428-23658474)
chr8 (22-57)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (11-103)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (52-125)||(130796-130870)
scaffold0003 (202-261)||(130638-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (11-80)||(13569-13638)
[»] chr2 (1 HSPs)
chr2 (22-125)||(23656470-23656575)
[»] scaffold0063 (2 HSPs)
scaffold0063 (189-261)||(28443-28513)
scaffold0063 (88-125)||(28342-28379)
[»] scaffold0061 (1 HSPs)
scaffold0061 (202-261)||(18097-18156)
[»] chr4 (1 HSPs)
chr4 (36-105)||(3576240-3576311)


Alignment Details
Target: scaffold0218 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 14493 - 14378
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14493 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14394  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||||||||    
T  14393 atgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 14314 - 14254
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatg 249  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatg 14254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 29173 - 29058
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29173 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 29074  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||||||||    
T  29073 atgttagtgatgatga 29058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 28994 - 28922
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 28922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 24782 - 24725
Alignment:
Q  204 atatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 24725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 16642413 - 16642300
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  16642413 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 16642314  T
Q  110 atgttagtgatgat 123  Q
    ||||||||||||||    
T  16642313 atgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 4712799 - 4712913
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  4712799 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 4712898  T
Q  110 atgttagtgatgatg 124  Q
    |||||||||||||||    
T  4712899 atgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14062777 - 14062892
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14062777 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14062876  T
Q  110 atgttagtgatgatga 125  Q
    |||||||| |||||||    
T  14062877 atgttagttatgatga 14062892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14055036 - 14055151
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14055036 agagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14055135  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||| ||||    
T  14055136 atgttagtgataatga 14055151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  120 tga 122  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 16642197 - 16642138
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 16642138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 4712995 - 4713054
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatg 4713054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 14062981 - 14063040
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||| |||||||||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatg 14063040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 14055221 - 14055279
Alignment:
Q  203 tatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||| |||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatg 14055279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14989374 - 14989489
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14989374 agagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14989473  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||||||||    
T  14989474 atgttagtgatgatga 14989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 14980262 - 14980376
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  14980262 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14980361  T
Q  110 atgttagtgatgatg 124  Q
    |||||||||||||||    
T  14980362 atgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 14980458 - 14980517
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 14980517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 10906902 - 10906938
Alignment:
Q  89 atgagaaatgataatgtttatatgttagtgatgatga 125  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatga 10906938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 51658661 - 51658776
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  51658661 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat 51658760  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||||||||    
T  51658761 atgttagtgatgatga 51658776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 13882243 - 13882350
Alignment:
Q  19 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  118 gatgatga 125  Q
    ||||||||    
T  13882343 gatgatga 13882350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 13882462 - 13882521
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||| |||||||||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatg 13882521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  18 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 111  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 51658854 - 51658910
Alignment:
Q  205 tatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||| ||| |||| |||||||||| |||||||||||||||||||| |||||| ||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatg 51658910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 48376903 - 48376788
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  48376903 agagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 48376804  T
Q  110 atgttagtgatgatga 125  Q
    |||||| |||||||||    
T  48376803 atgttattgatgatga 48376788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 16060628 - 16060513
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 109  Q
    ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  16060628 agagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttat 16060529  T
Q  110 atgttagtgatgatga 125  Q
    ||||||||||||||||    
T  16060528 atgttagtgatgatga 16060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 4531759 - 4531864
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  120 tgatga 125  Q
    ||||||    
T  4531859 tgatga 4531864  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 16060449 - 16060379
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 16060379  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 9080269 - 9080211
Alignment:
Q  203 tatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||| |||||||||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatg 9080211  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 9080375 - 9080339
Alignment:
Q  89 atgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatga 9080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 48376689 - 48376642
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatg 48376642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 16069015 - 16069062
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||| |||||||||| ||||||||||||||||||||  ||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatg 16069062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 23658650 - 23658527
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgata 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| |||    
T  23658650 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattata 23658551  T
Q  102 atgtttatatgttagtgatgatga 125  Q
    ||||||||||||||||||||||||    
T  23658550 atgtttatatgttagtgatgatga 23658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 23657885 - 23657827
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatata 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23657885 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatata 23657827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 23657807 - 23657752
Alignment:
Q  71 atgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  23657807 atgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatga 23657752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 23657699 - 23657653
Alignment:
Q  215 gactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatg 23657653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 23658474 - 23658428
Alignment:
Q  215 gactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatg 23658428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 103  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  94 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 130870 - 130796
Alignment:
Q  52 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 130796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 130697 - 130638
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatg 130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 13569 - 13638
Alignment:
Q  11 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 80  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13569 agagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 23656470 - 23656575
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  120 tgatga 125  Q
    | ||||    
T  23656570 taatga 23656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 28443 - 28513
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatg 28513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 28342 - 28379
Alignment:
Q  88 gatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatga 28379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgtcttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| || |||| |||||||||||| |||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  36 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 105  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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