View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_38 (Length: 236)
Name: NF17814_low_38
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 38820701 - 38820923
Alignment:
| Q |
14 |
caataacaatgcatatctgaaatagaatagaaaatgaaaaaagaacaaaatcaattagtctcattaatgtgctaattgagtttggtaaatgctcgtaatt |
113 |
Q |
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| T |
38820701 |
caataacaatgcatatctgaaatagaatagaaaatgaaaaaagaacaaaatcaattagtctcattaatgtgctaattgagtttggtaaatgctcgtaatt |
38820800 |
T |
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| Q |
114 |
aacctacccaattaattgtccaagacaagccaaatttcttgggtttcttgagtttaagccagatgatacagggcagctgcaagaataatagtatataaat |
213 |
Q |
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| T |
38820801 |
aacctacccaattaattgtccaagacaagccaaatttcttgggtttcttgagtttaagccagatgatacagggcagctgcaagaataatagtatataaat |
38820900 |
T |
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| Q |
214 |
taagacaaattaggctcgtatac |
236 |
Q |
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| T |
38820901 |
taagacaaattaggctcgtatac |
38820923 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 34410645 - 34410580
Alignment:
| Q |
118 |
tacccaattaattgtccaagacaagccaaatttcttgggtttcttgagtttaagccagatgataca |
183 |
Q |
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| T |
34410645 |
tacccaatttattatccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgataca |
34410580 |
T |
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